ggKbase home page
Advanced Search
Search Help

04302015_21_Deltaproteobacteria_66_5

In projects: 04302015_21

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 04302015_21_UNK

Properties

Avg. coverage: 4.97 Longest contig: 6.25 Kbp Bin length: 1.86 Mbp GC content: 66.49 %
Contigs count: 1138 Features count: 2417 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 28 / 55 MC: 2 BSCG 31 / 51 MC: 3 ASCG 10 / 38 MC: 4
Displaying items 451-500 of 1138 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
04302015_21_scaffold_29564
Species: Myxococcus fulvus (50%)
2 1160 bp 63.45 5.43 100.35
04302015_21_scaffold_26827
Species: RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated (50%)
2 1223 bp 65.74 5.27 92.23
04302015_21_scaffold_24867
Species: Myxococcus stipitatus (50%)
2 1276 bp 69.28 4.00 95.92
04302015_21_scaffold_15396
Species: Syntrophus aciditrophicus (50%)
2 1647 bp 70.19 3.46 100.00
04302015_21_scaffold_3932
Species: Anaeromyxobacter sp. PSR-1 (50%)
2 3232 bp 68.29 7.47 99.88
04302015_21_scaffold_27804
Species: RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated (50%)
2 1199 bp 60.80 4.25 95.08
04302015_21_scaffold_41992
Species: Plesiocystis pacifica (50%)
2 1093 bp 70.91 3.84 75.48
04302015_21_scaffold_17510
Species: RIFOXYB2_FULL_Deltaproteobacteria_66_7_curated (50%)
2 1540 bp 65.58 4.77 86.30
04302015_21_scaffold_35542
Species: GWA2_Deltaproteobacteria_65_63_curated (100%)
2 1047 bp 59.12 5.16 76.50
04302015_21_scaffold_23126
Species: Myxococcus xanthus (50%)
2 1325 bp 68.68 2.94 81.74
04302015_21_scaffold_4150
Species: Smithella sp. SCADC (50%)
2 3147 bp 58.63 3.96 87.23
04302015_21_scaffold_59291
Species: Haliangium ochraceum (50%)
2 1388 bp 58.07 4.65 81.92
04302015_21_scaffold_20759
Species: GWA2_Deltaproteobacteria_65_63_curated (100%)
2 1405 bp 59.29 4.91 65.12
04302015_21_scaffold_25599
Species: Plesiocystis pacifica (50%)
2 1255 bp 70.44 5.02 66.69
04302015_21_scaffold_30840
Species: RBG_13_Deltaproteobacteria_51_10_curated (50%)
2 2048 bp 66.21 5.13 101.22
04302015_21_scaffold_21096
Species: Myxococcus xanthus (50%)
2 1392 bp 66.52 4.85 99.78
04302015_21_scaffold_31961
Species: GWA2_Deltaproteobacteria_65_63_curated (100%)
2 1110 bp 65.41 3.24 81.08
04302015_21_scaffold_23129
Species: CG_Delta_02 (50%)
2 1325 bp 63.47 5.21 91.47
04302015_21_scaffold_19082
Species: CG_Delta_02 (100%)
2 1469 bp 69.98 4.08 94.55
04302015_21_scaffold_23642
Species: CG_Delta_02 (50%)
2 1309 bp 60.58 3.78 84.34
04302015_21_scaffold_21099
Species: RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated (50%)
2 1392 bp 69.40 4.42 100.43
04302015_21_scaffold_29574
Species: GWC2_Deltaproteobacteria_55_46b_curated (50%)
2 1160 bp 65.26 4.66 77.84
04302015_21_scaffold_8725
Species: CG_Delta_02 (100%)
2 2187 bp 70.28 5.62 98.35
04302015_21_scaffold_22461
Species: Hyalangium minutum (50%)
2 1727 bp 66.30 5.56 72.44
04302015_21_scaffold_20766
Species: CG_Delta_02 (100%)
2 1405 bp 68.54 5.66 92.03
04302015_21_scaffold_36182
Species: RBG_16_Deltaproteobacteria_49_23_curated (50%)
2 1036 bp 67.57 2.90 117.28
04302015_21_scaffold_26839
Species: RBG_16_Deltaproteobacteria_64_85_curated (50%)
2 1223 bp 63.53 3.80 94.44
04302015_21_scaffold_8983
Species: CG_Delta_02 (100%)
2 2154 bp 67.64 5.71 98.75
04302015_21_scaffold_21871
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1366 bp 60.76 3.73 71.60
04302015_21_scaffold_31200
Species: CG_Delta_02 (50%)
2 1126 bp 70.87 4.26 91.65
04302015_21_scaffold_6736
Species: CG_Delta_02 (100%)
2 2480 bp 65.65 4.72 99.07
04302015_21_scaffold_52731
Species: Desulfatibacillum alkenivorans (100%)
2 1222 bp 60.39 3.56 94.03
04302015_21_scaffold_32305
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 1104 bp 70.38 4.89 100.00
04302015_21_scaffold_26329
Species: CG_Delta_02 (100%)
2 1236 bp 63.51 5.10 100.49
04302015_21_scaffold_25097
Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (50%)
2 1269 bp 59.26 4.49 86.05
04302015_21_scaffold_15153
Species: Geobacter uraniireducens (50%)
2 1660 bp 59.04 5.15 90.90
04302015_21_scaffold_69852
Species: delta proteobacterium NaphS2 (50%)
2 1164 bp 63.57 5.41 101.29
04302015_21_scaffold_37466
Species: Sandaracinus amylolyticus (50%)
2 1016 bp 66.44 3.84 99.80
04302015_21_scaffold_35042
Species: Geoalkalibacter ferrihydriticus (50%)
2 1055 bp 63.79 4.41 100.38
04302015_21_scaffold_19602
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1449 bp 71.64 5.90 100.21
04302015_21_scaffold_36442
Species: Desulfarculus baarsii (50%)
2 1032 bp 75.10 4.22 100.29
04302015_21_scaffold_29324
Species: RBG_16_Deltaproteobacteria_64_85_curated (50%)
2 1165 bp 65.24 3.35 100.17
04302015_21_scaffold_20771
Species: Desulfobacca acetoxidans (50%)
2 1404 bp 57.98 2.99 71.15
04302015_21_scaffold_36188
Species: Desulfovibrio sp. TomC (50%)
2 1036 bp 66.31 2.90 100.19
04302015_21_scaffold_18317
Species: RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated (50%)
2 1502 bp 67.91 4.29 100.27
04302015_21_scaffold_15926
Species: Cystobacter fuscus (50%)
2 1620 bp 58.27 4.07 71.67
04302015_21_scaffold_27566
Species: RifOxyA12_full_Proteobacteria_58_15_curated (50%)
2 1205 bp 70.54 2.99 86.14
04302015_21_scaffold_37215
Species: GWC2_Deltaproteobacteria_55_46b_curated (50%)
2 1020 bp 63.73 5.88 98.82
04302015_21_scaffold_20007
Species: CG_Delta_02 (50%)
2 1433 bp 66.02 4.40 82.48
04302015_21_scaffold_19351
Species: RIFOXYD2_FULL_Deltaproteobacteria_66_9_curated (50%)
2 1458 bp 68.18 3.91 98.77
Displaying items 451-500 of 1138 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.