ggKbase home page

Ig3397_v2_scaffold_1025

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
Ig3397_v2_scaffold_1025_1
unknown

Not on your lists

comp(2..232)
DNA (231bp) protein (77aa)

This feature has no annotations

Ig3397_v2_scaffold_1025_2
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

336..1397
DNA (1062bp) protein (354aa)
butyrate kinase (EC:2.7.2.7); K00929 butyrate kinase [EC:2.7.2.7] rbh
Probable butyrate kinase id=3533749 bin=GWB1_CP_36_13 species=Clostridiaceae bacterium L21-TH-D2 genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_3
delta proteobacterium NaphS2, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1423..2526
DNA (1104bp) protein (368aa)
leuB; 3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
Putative 3-isopropylmalate dehydrogenase (Fragment) n=1 Tax=delta proteobacterium NaphS2 RepID=D8FBY4_9DELT rbh
Putative 3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:EFK06762.1}; Flags: Fragment;; TaxID=88274 species="Bacteria; Proteobacteria; Deltaproteobacteria.;" source="delta proteobacterium NaphS2.;"
Ig3397_v2_scaffold_1025_4
unknown

Not on your lists

comp(2701..3219)
DNA (519bp) protein (173aa)

This feature has no annotations

Ig3397_v2_scaffold_1025_5
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(3224..5098)
DNA (1875bp) protein (625aa)
ABC transporter related protein id=2878095 bin=GWB1_CP_36_13 species=Denitrovibrio acetiphilus genus=Denitrovibrio taxon_order=Deferribacterales taxon_class=Deferribacteres phylum=Deferribacteres tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
uup; ABC transporter ATPase; K15738 ATP-binding cassette, subfamily F, uup rbh
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_6
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5309..5650
DNA (342bp) protein (114aa)
Anti-sigma F factor antagonist n=1 Tax=Clostridium ultunense Esp RepID=M1ZBZ0_9CLOT
Anti-sigma F factor antagonist {ECO:0000256|RuleBase:RU003749}; Stage II sporulation protein {ECO:0000256|RuleBase:RU003749}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium ultunense Esp.;"
anti-sigma-factor antagonist
Ig3397_v2_scaffold_1025_7
Methanocella arvoryzae, Methanocella, Methanocellales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

5688..6410
DNA (723bp) protein (241aa)
Predicted oxidoreductase FAD/NAD(P)-binding component n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W8X3_UNCMA
oxidoreductase FAD/NAD(P)-binding component
Predicted oxidoreductase FAD/NAD(P)-binding component {ECO:0000313|EMBL:CAJ35153.1}; TaxID=351160 species="Archaea; Euryarchaeota; Methanomicrobia; Methanocellales; Methanocellaceae; Methanocella.;" source="Methanocella arvoryzae (strain DSM 22066 / NBRC 105507 / MRE50).;"
Ig3397_v2_scaffold_1025_8
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(6412..8082)
DNA (1671bp) protein (557aa)
Diguanylate cyclase and metal dependent phosphohydrolase id=3526029 bin=GWB1_CP_36_13 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
metal dependent phosphohydrolase
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_9
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(8069..9169)
DNA (1101bp) protein (367aa)
hypothetical protein Lbro5_03379 id=3526032 bin=GWB1_CP_36_13 species=unknown genus=Leptospira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3 rbh
hypothetical protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_10
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(9177..10229)
DNA (1053bp) protein (351aa)
Outer membrane autotransporter barrel id=3526034 bin=GWB1_CP_36_13 species=Cytophaga hutchinsonii genus=Cytophaga taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Kelch repeat protein
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_11
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(10285..11223)
DNA (939bp) protein (313aa)
id=3526036 bin=GWB1_CP_36_13 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_12

Not on your lists

comp(11293..12732)
DNA (1440bp) protein (480aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Methanospirillum hungatei JF-1 (strain ATCC 27890 / DSM 864 / NBRC 100397 / JF-1) RepID=Q2FRH3_METHJ
Uncharacterized protein {ECO:0000313|EMBL:KKN57772.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
multi-sensor signal transduction histidine kinase
Ig3397_v2_scaffold_1025_13
Ilyobacter polytropus, Ilyobacter, Fusobacteriales, Fusobacteriia, Fusobacteria, Bacteria

Not on your lists

comp(12729..14447)
DNA (1719bp) protein (573aa)
Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H929_ILYPC
PAS/PAC sensor-containing diguanylate cyclase
Diguanylate cyclase with PAS/PAC sensor {ECO:0000313|EMBL:ADO82001.1}; Flags: Precursor;; TaxID=572544 species="Bacteria; Fusobacteria; Fusobacteriales; Fusobacteriaceae; Ilyobacter.;" source="Ilyobacter polytropus (strain DSM 2926 / CuHBu1).;"
Ig3397_v2_scaffold_1025_14
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14637..15050)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Vibrio anguillarum RepID=UPI0003669E68
Tax=BJP_IG2103_Dechloromonas_63_51
Ig3397_v2_scaffold_1025_15
Rheinheimera nanhaiensis, Rheinheimera, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15081..16403)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Orenia marismortui RepID=UPI000381506B
Response regulator receiver modulated serine phosphatase {ECO:0000313|EMBL:GAB57431.1}; TaxID=562729 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Rheinheimera.;" source="Rheinheimera nanhaiensis E407-8.;"
response regulator receiver modulated serine phosphatase
Ig3397_v2_scaffold_1025_16
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(16666..18504)
DNA (1839bp) protein (613aa)
Serine/threonine protein kinase id=3682453 bin=GWB1_CP_36_13 species=Leptonema illini genus=Leptonema taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
sensor histidine kinase of a two component response regulator
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_17
Caldithrix abyssi, Caldithrix, Bacteria

Not on your lists

19106..19561
DNA (456bp) protein (152aa)
hypothetical protein n=1 Tax=Cloacimonetes bacterium SCGC AAA252-O17 RepID=UPI0003692145
Putative uncharacterized protein {ECO:0000313|EMBL:EHO42741.1}; TaxID=880073 species="Bacteria; Caldithrix.;" source="Caldithrix abyssi DSM 13497.;"
hypothetical protein
Ig3397_v2_scaffold_1025_trna_1
unknown

Not on your lists

19669..19757
DNA (89bp)
transferRNA
Ig3397_v2_scaffold_1025_18
GWB1_Spirochaetes_60_80_curated, Spirochaetes, Bacteria

Not on your lists

19896..21251
DNA (1356bp) protein (452aa)
Putative uncharacterized protein id=3439001 bin=GWB1_Spirochaetales_60_80 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_Spirochaetales_60_80 organism_group=Spirochaetes rbh
hypothetical protein
Tax=GWB1_Spirochaetes_60_80_curated
Ig3397_v2_scaffold_1025_19
RIFOXYC1_FULL_Spirochaetes_54_7_curated, Spirochaetales, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

21270..21647
DNA (378bp) protein (126aa)
Putative uncharacterized protein id=2986881 bin=GWF1_Spirochaetes_60_12 species=Spirochaeta thermophila genus=Spirochaeta taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF1_Spirochaetes_60_12 organism_group=Spirochaetes
hypothetical protein
Tax=RIFOXYC1_FULL_Spirochaetes_54_7_curated
Ig3397_v2_scaffold_1025_20
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists

comp(21689..22534)
DNA (846bp) protein (282aa)
MerR family HTH transcriptional regulator id=3777607 bin=GWB1_CP_36_13 species=Clostridium saccharoperbutylacetonicum genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
transcriptional regulator MerR family
Tax=GWB1_Spirochaetes_36_13_curated
Ig3397_v2_scaffold_1025_21
BJP_IG2069_Desfulfarculales_53_13, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22547..24790)
DNA (2244bp) protein (748aa)
histidine kinase n=1 Tax=Desulfospira joergensenii RepID=UPI0003B44667
sensory transduction histidine kinase
Tax=BJP_IG2069_Desfulfarculales_53_13
Ig3397_v2_scaffold_1025_22
GWB1_Spirochaetes_36_13_curated, Spirochaetes, Bacteria

Not on your lists


comp(24957..25196)
DNA (240bp) protein (80aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginyl-tRNA synthetase ArgS id=2819234 bin=GWB1_CP_36_13 species=Brachyspira pilosicoli genus=Brachyspira taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWB1_CP_36_13 organism_group=Unknown_CP organism_desc=sibling to Aquificae (deep branch) based on rpS3
Tax=GWB1_Spirochaetes_36_13_curated
Displaying 23 items

View Taxonomy