ggKbase | organisms

Consensus taxonomy: Spirochaetes → Bacteria

Metagenomic Context

Parent: BJP_Ig2102_UNK

Properties

Avg. coverage: 4.62 Longest contig: 25.04 Kbp Bin length: 2.25 Mbp GC content: 51.25 %

Contigs count: 1040 Features count: 2841 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 44 / 55 MC: 2 BSCG 40 / 51 MC: 1 ASCG 10 / 38 MC: 4

Description

Moderate, probably partial

Displaying items 751-800 of 1040 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
bjp_ig2102_scaffold_29146 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1459 bp	54.63	4.45	94.38
bjp_ig2102_scaffold_32891 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1321 bp	50.04	4.80	100.15
bjp_ig2102_scaffold_43868 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1032 bp	55.04	4.24	95.64
bjp_ig2102_scaffold_44213 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1025 bp	55.80	5.60	101.27
bjp_ig2102_scaffold_21677 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1866 bp	49.41	3.97	90.19
bjp_ig2102_scaffold_34469 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1266 bp	53.63	4.06	91.94
bjp_ig2102_scaffold_31333 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1376 bp	53.78	3.29	97.89
bjp_ig2102_scaffold_17734 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	2208 bp	52.54	4.58	99.46
bjp_ig2102_scaffold_25902 Species: BJP_S1_SUB10_Syntrophobacterales_50_21 (100%)	2	1610 bp	50.25	4.13	79.57
bjp_ig2102_scaffold_26567 Species: Sphaerochaeta coccoides (50%)	2	1578 bp	56.15	4.02	100.19
bjp_ig2102_scaffold_33792 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	1289 bp	51.75	4.92	82.39
bjp_ig2102_scaffold_42248 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1065 bp	54.93	3.69	98.87
bjp_ig2102_scaffold_28553 Species: Paenibacillus durus (50%)	2	1486 bp	49.93	4.78	82.97
bjp_ig2102_scaffold_24161 Species: Sphaerochaeta pleomorpha (50%)	2	1708 bp	50.70	4.16	96.78
bjp_ig2102_scaffold_19633 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	2026 bp	51.23	5.22	96.69
bjp_ig2102_scaffold_26570 Species: Sphaerochaeta pleomorpha (50%)	2	1578 bp	53.99	4.69	86.69
bjp_ig2102_scaffold_42762 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1054 bp	54.17	3.72	100.47
bjp_ig2102_scaffold_18075 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	2170 bp	51.15	5.50	93.59
bjp_ig2102_scaffold_37355 Species: Sphaerochaeta pleomorpha (50%)	2	1185 bp	55.70	4.97	99.49
bjp_ig2102_scaffold_40499 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1106 bp	51.36	5.46	98.19
bjp_ig2102_scaffold_36459 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1209 bp	49.30	4.87	94.54
bjp_ig2102_scaffold_44732 Species: Sphaerochaeta pleomorpha (50%)	2	1014 bp	48.13	3.72	57.40
bjp_ig2102_scaffold_35780 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1229 bp	44.59	4.30	94.47
bjp_ig2102_scaffold_30036 Species: RBG_16_Spirochaetes_49_21_curated (50%)	2	1424 bp	49.16	3.18	103.02
bjp_ig2102_scaffold_36973 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1195 bp	47.87	5.31	98.16
bjp_ig2102_scaffold_27238 Species: Sphaerochaeta pleomorpha (50%)	2	1545 bp	53.98	5.38	97.86
bjp_ig2102_scaffold_33798 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	1289 bp	44.69	4.80	76.57
bjp_ig2102_scaffold_23966 Species: BJP_08E140C01_Spirochaeta_53_29 (100%)	2	1719 bp	54.28	4.04	98.95
bjp_ig2102_scaffold_42254 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1065 bp	51.83	4.54	65.92
bjp_ig2102_scaffold_32903 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	1321 bp	47.09	4.80	100.15
bjp_ig2102_scaffold_16960 Species: Sphaerochaeta pleomorpha (100%)	2	2292 bp	56.41	4.94	98.43
bjp_ig2102_scaffold_34992 Species: BJP_08E140C01_Spirochaeta_53_29 (100%)	2	1252 bp	54.87	4.22	96.57
bjp_ig2102_scaffold_31600 Species: Sphaerochaeta globosa (100%)	2	1366 bp	51.17	4.53	98.83
bjp_ig2102_scaffold_44482 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1019 bp	48.38	4.30	88.62
bjp_ig2102_scaffold_17490 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	2233 bp	52.31	4.40	95.25
bjp_ig2102_scaffold_29674 Species: BJP_IG2069_Syntrophobacterales_46_30 (100%)	2	1438 bp	52.92	4.10	91.79
bjp_ig2102_scaffold_43371 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1042 bp	55.18	3.91	99.04
bjp_ig2102_scaffold_44484 Species: BJP_08E140C01_Spirochaeta_53_29 (100%)	2	1019 bp	54.07	3.56	81.84
bjp_ig2102_scaffold_12260 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	2998 bp	45.00	5.09	91.56
bjp_ig2102_scaffold_13636 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	2745 bp	53.30	5.50	93.88
bjp_ig2102_scaffold_41668 Species: GWC2_Spirochaetes_52_13_curated (50%)	2	1079 bp	53.75	5.18	100.09
bjp_ig2102_scaffold_32652 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1329 bp	45.07	3.52	91.87
bjp_ig2102_scaffold_25405 Species: Sphaerochaeta pleomorpha (50%)	2	1636 bp	49.33	4.71	95.54
bjp_ig2102_scaffold_14061 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	2678 bp	55.19	5.07	99.93
bjp_ig2102_scaffold_29933 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1428 bp	50.07	4.44	92.23
bjp_ig2102_scaffold_38493 Species: Sphaerochaeta globosa (100%)	2	1155 bp	53.59	4.45	95.58
bjp_ig2102_scaffold_38750 Species: GWC2_Spirochaetes_52_13_curated (100%)	2	1149 bp	44.73	3.15	100.26
bjp_ig2102_scaffold_21439 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	1881 bp	55.56	5.30	96.97
bjp_ig2102_scaffold_16459 Species: BJP_08E140C01_Spirochaeta_53_29 (50%)	2	2351 bp	49.55	5.27	95.96
bjp_ig2102_scaffold_19395 Species: Sphaerochaeta coccoides (100%)	2	2046 bp	48.53	4.35	89.59

Displaying items 751-800 of 1040 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (BJP_IG2102_Hor_167_2014_GWC2_Spirochaete_51_5) and add all its contigs / scaffolds to the organism you choose below

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Other organism

BJP_IG2102_Hor_167_2014_GWC2_Spirochaete_51_5

BJP_IG2102_Spirochaetes_51_5

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

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