ggKbase home page

bjp_ig3402_scaffold_1770_13

Organism: BJP_IG3402_Parcubacteria_38_155

near complete RP 41 / 55 MC: 2 BSCG 42 / 51 MC: 1 ASCG 10 / 38 MC: 1
Location: 11228..11680

Top 3 Functional Annotations

Value Algorithm Source
smpB; ssrA RNA (tmRNA)-binding protein; K03664 SsrA-binding protein Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_08_40_12b_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 149.0
  • Bit_score: 190
  • Evalue 1.40e-45
SsrA-binding protein id=4731743 bin=GWC2_OD1_43_27 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete) similarity UNIREF
DB: UNIREF100
  • Identity: 55.8
  • Coverage: 147.0
  • Bit_score: 168
  • Evalue 4.10e-39
smpB; ssrA RNA (tmRNA)-binding protein similarity KEGG
DB: KEGG
  • Identity: 53.7
  • Coverage: 149.0
  • Bit_score: 155
  • Evalue 1.30e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

R_RIF_OD1_08_40_12b → RIF-OD1-8 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 453
ATGCCAACCCTTGCCACCAATAAACGAGCGGCATTTGACTATGAAATCCTGGAGAAATTCGAGGCAGGTTTGGTATTAGCCGGATATGAAGTAAAGGCCGCGAGATTGGGATATATAAGCCTAAAAGGCGCTTATGTTGTAATAACCGGCGGCGAAGCTTTTCTTCTAAATACCCATATCTCTCATTATCAGCCGAAAAATATGCCGGCCGACTATGAACCAACCCGCACCCGAAAACTTCTTCTCCATAAATCCCAAATCAACCGTTTAATTGGAGAATCCAAGGAAAAAGGCTTGACACTGATACCGCTTTCAGTGTATACTAACACAATAGGAAAAATTAAACTTTCCTTTGCCGTGGCGCGCGGAAAGAAAAAATTCGACAAACGAGCGGCGATAGCGGAAAAGGAAGCGAAACGCCGAATACAGAGAGCGATAAGGGAGAGAGTATAA
PROTEIN sequence
Length: 151
MPTLATNKRAAFDYEILEKFEAGLVLAGYEVKAARLGYISLKGAYVVITGGEAFLLNTHISHYQPKNMPADYEPTRTRKLLLHKSQINRLIGESKEKGLTLIPLSVYTNTIGKIKLSFAVARGKKKFDKRAAIAEKEAKRRIQRAIRERV*