ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 8.85 Longest contig: 107.60 Kbp Bin length: 603.35 Mbp GC content: 62.45 %

Contigs count: 292093 Features count: 802705 rRNAs count: 39 tRNAs count: 5198

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 201-250 of 292093 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_2_scaffold_203959 Species: Candidatus Jettenia caeni (50%)	2	1202 bp	65.47	1.88	109.82
13_1_20cm_2_scaffold_83604 Domain: Bacteria (100%)	3	1844 bp	67.46	4.08	109.82
13_1_20cm_2_scaffold_219200	3	1683 bp	71.00	11.19	109.80
13_1_20cm_2_scaffold_136643 Domain: Bacteria (66.67%)	3	1459 bp	68.61	3.61	109.80
13_1_20cm_2_scaffold_122950 Species: CSP1_5_NC10 (50%)	2	1533 bp	50.49	5.08	109.79
13_1_20cm_2_scaffold_225897 Species: marine sediment metagenome (50%)	2	1145 bp	59.21	3.95	109.78
13_1_20cm_2_scaffold_194738 Species: GWA2_Rokubacteria_70_23_curated (50%)	2	1230 bp	55.04	4.49	109.76
13_1_20cm_2_scaffold_242807	3	1728 bp	57.12	4.07	109.72
13_1_20cm_2_scaffold_253432 Species: Amycolatopsis decaplanina (50%)	2	1080 bp	68.89	2.56	109.72
13_1_20cm_2_scaffold_221131	3	1157 bp	51.86	3.04	109.68
13_1_20cm_2_scaffold_255798 Species: Candidatus Caldiarchaeum subterraneum (50%)	2	1075 bp	54.05	3.50	109.67
13_1_20cm_2_scaffold_128524 Species: GWC2_RIF_CHLX_73_18_curated (66.67%)	3	1502 bp	64.71	3.68	109.65
13_1_20cm_2_scaffold_236737 Domain: Bacteria (66.67%)	3	1119 bp	52.73	1.79	109.65
13_1_20cm_2_scaffold_347949	4	1494 bp	64.79	18.82	109.64
13_1_20cm_2_scaffold_174756 Species: Gemmatimonadetes bacterium KBS708 (100%)	2	1297 bp	61.06	4.26	109.64
13_1_20cm_2_scaffold_245077 Species: Methylococcus capsulatus (50%)	2	1100 bp	64.64	2.97	109.64
13_1_20cm_2_scaffold_178571 Species: Anaeromyxobacter dehalogenans (50%)	2	1284 bp	70.87	6.65	109.58
13_1_20cm_2_scaffold_172452 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1306 bp	68.53	9.61	109.57
13_1_20cm_2_scaffold_172472	3	1306 bp	52.07	2.50	109.57
13_1_20cm_2_scaffold_193120 Species: RBG_16_RIF_CHLX_69_14_curated (100%)	2	1235 bp	73.44	3.86	109.56
13_1_20cm_2_scaffold_329124 Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (50%)	2	1646 bp	65.86	7.78	109.54
13_1_20cm_2_scaffold_151004 Domain: Bacteria (66.67%)	3	1392 bp	72.13	3.79	109.48
13_1_20cm_2_scaffold_156384	5	1368 bp	66.52	2.94	109.43
13_1_20cm_2_scaffold_230260 Species: Burkholderiales bacterium GJ-E10 (50%)	2	1135 bp	67.40	2.87	109.43
13_1_20cm_2_scaffold_286888 Species: BJP_IG2102_Gammaproteobacteria_62_140 (50%)	2	1840 bp	68.10	4.77	109.40
13_1_20cm_2_scaffold_124781 Species: RBG_13_Nitrospirae_41_22_curated (50%)	2	1522 bp	47.37	4.45	109.40
13_1_20cm_2_scaffold_361101 Domain: Bacteria (66.67%)	3	1339 bp	60.72	6.56	109.34
13_1_20cm_2_scaffold_276382 Species: Mesorhizobium alhagi (50%)	2	1018 bp	54.52	2.71	109.33
13_1_20cm_2_scaffold_224985 Species: Ktedonobacter racemifer (50%)	2	1147 bp	51.61	3.50	109.33
13_1_20cm_2_scaffold_408112 Species: Sphaerobacter thermophilus (50%)	2	1257 bp	69.93	7.39	109.31
13_1_20cm_2_scaffold_144051	13	1423 bp	58.12	5.29	109.28
13_1_20cm_2_scaffold_164226 Species: Chloracidobacterium thermophilum (50%)	2	1337 bp	58.49	2.44	109.27
13_1_20cm_2_scaffold_345026 Species: Mucilaginibacter paludis (50%)	2	1370 bp	58.10	5.86	109.27
13_1_20cm_2_scaffold_249348 Order: Burkholderiales (66.67%)	3	1090 bp	66.24	4.38	109.27
13_1_20cm_2_scaffold_193577	4	1233 bp	52.15	2.24	109.25
13_1_20cm_2_scaffold_272523 Species: Pyrinomonas methylaliphatogenes (50%)	2	1030 bp	50.39	4.87	109.22
13_1_20cm_2_scaffold_272350 Species: Chthoniobacter flavus (50%)	2	1030 bp	54.95	3.17	109.22
13_1_20cm_2_scaffold_214452 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (66.67%)	3	1577 bp	61.64	6.05	109.20
13_1_20cm_2_scaffold_250169 Species: Candidatus Saccharibacteria bacterium GW2011_GWA2_46_10 (50%)	2	1088 bp	62.87	4.15	109.19
13_1_20cm_2_scaffold_208107 Species: RBG_16_Chloroflexi_54_11_curated (50%)	2	1190 bp	57.73	2.95	109.16
13_1_20cm_2_scaffold_180260 Domain: Bacteria (66.67%)	3	1278 bp	69.25	4.12	109.16
13_1_20cm_2_scaffold_195973 Species: uncultured archaeon GZfos35A2 (50%)	2	1226 bp	61.99	3.69	109.14
13_1_20cm_2_scaffold_197918 Class: Betaproteobacteria (100%)	3	1644 bp	65.09	14.81	109.12
13_1_20cm_2_scaffold_218815 Species: GWC2_Gemmatimonadetes_71_10_curated (50%)	2	1163 bp	65.86	4.10	109.11
13_1_20cm_2_scaffold_278647 Species: Methanolobus tindarius (50%)	2	1012 bp	54.05	6.20	109.09
13_1_20cm_2_scaffold_223701 Species: RBG_16_Nitrospirae_43_11_curated (50%)	2	1150 bp	55.74	2.84	109.04
13_1_20cm_2_scaffold_264921 Domain: Bacteria (66.67%)	3	1051 bp	55.66	5.97	109.04
13_1_20cm_2_scaffold_121666 Species: Frankia alni (50%)	2	1541 bp	72.29	3.42	109.02
13_1_20cm_2_scaffold_193623 Species: RBG_13_Acidobacteria_68_16_curated (50%)	2	1233 bp	66.75	5.50	109.00
13_1_20cm_2_scaffold_235120 Species: Tetrasphaera australiensis (50%)	2	1123 bp	69.99	4.47	108.99

Displaying items 201-250 of 292093 in total

13_1_20CM_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20CM_2_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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