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13_1_20CM_3_Gemmatimonas_aurantiaca_60_15

13_1_20CM_3_Gemmatimonadetes_60_15
In projects: 13_1_20CM_3  |  angelo_ncbi_2016  |  gemmatimonadetes_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: 13_1_20cm_3_UNK

Properties

Avg. coverage: 14.51 Longest contig: 8.00 Kbp Bin length: 897.13 Kbp GC content: 60.28 %
Contigs count: 298 Features count: 1066 rRNAs count: 0 tRNAs count: 10

Genome completeness

partial RP 35 / 55 MC: 1 BSCG 30 / 51 ASCG 8 / 38 MC: 1
Displaying items 201-250 of 298 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_3_scaffold_192872
Species: Gemmatimonas aurantiaca (50%)
2 1998 bp 59.36 14.45 85.14
13_1_20cm_3_scaffold_92002
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1802 bp 58.32 13.37 100.06
13_1_20cm_3_scaffold_156704
Species: Gemmatimonas aurantiaca (50%)
2 2441 bp 61.25 14.19 96.11
13_1_20cm_3_scaffold_179756
Species: Saccharopolyspora erythraea (50%)
2 1344 bp 61.38 13.07 66.74
13_1_20cm_3_scaffold_231135
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1192 bp 61.91 11.58 91.61
13_1_20cm_3_scaffold_274223
Species: Gemmatimonas aurantiaca (50%)
2 1071 bp 61.72 12.42 99.72
13_1_20cm_3_scaffold_32592
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 2755 bp 61.27 15.85 89.07
13_1_20cm_3_scaffold_368883
Species: Gemmatimonas aurantiaca (100%)
2 1508 bp 62.60 13.15 100.27
13_1_20cm_3_scaffold_249116
Species: Cyclobacterium qasimii (50%)
2 1142 bp 60.42 16.48 97.72
13_1_20cm_3_scaffold_15235
Species: Gemmatimonas aurantiaca (100%)
2 3654 bp 60.10 15.73 97.78
13_1_20cm_3_scaffold_141753
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1496 bp 61.16 15.10 87.63
13_1_20cm_3_scaffold_98024
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 2712 bp 60.44 12.77 93.81
13_1_20cm_3_scaffold_143374
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1489 bp 62.32 11.46 61.45
13_1_20cm_3_scaffold_261341
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1107 bp 61.07 13.38 87.80
13_1_20cm_3_scaffold_100753
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1733 bp 59.78 15.79 100.06
13_1_20cm_3_scaffold_227474
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1202 bp 60.23 13.57 89.35
13_1_20cm_3_scaffold_309697
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1658 bp 62.79 12.26 86.13
13_1_20cm_3_scaffold_226565
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 2189 bp 61.49 16.05 100.05
13_1_20cm_3_scaffold_136711
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1520 bp 60.79 14.04 78.95
13_1_20cm_3_scaffold_182565
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1334 bp 60.27 16.18 96.25
13_1_20cm_3_scaffold_139252
Species: Gemmatimonas aurantiaca (50%)
2 2185 bp 61.14 15.16 100.09
13_1_20cm_3_scaffold_288324
Species: RBG_16_Ignavibacteria_36_9_curated (50%)
2 1034 bp 58.51 11.65 84.72
13_1_20cm_3_scaffold_68797
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2960 bp 60.37 16.28 97.91
13_1_20cm_3_scaffold_204465
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1267 bp 62.19 14.26 99.68
13_1_20cm_3_scaffold_220134
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1223 bp 62.80 12.52 89.04
13_1_20cm_3_scaffold_166202
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1394 bp 60.62 14.58 96.63
13_1_20cm_3_scaffold_220830
Species: Corallococcus coralloides (50%)
2 1221 bp 60.28 13.77 100.25
13_1_20cm_3_scaffold_195719
Species: Gemmatimonas aurantiaca (100%)
2 1293 bp 60.71 16.31 94.66
13_1_20cm_3_scaffold_111395
Species: Gemmatimonas aurantiaca (50%)
2 1660 bp 57.17 15.57 85.30
13_1_20cm_3_scaffold_84253
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 3118 bp 61.99 12.56 63.31
13_1_20cm_3_scaffold_49361
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2336 bp 59.08 13.86 94.01
13_1_20cm_3_scaffold_362955
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1838 bp 61.32 13.11 82.43
13_1_20cm_3_scaffold_139283
Species: Gemmatimonas aurantiaca (50%)
2 1507 bp 60.72 16.32 104.91
13_1_20cm_3_scaffold_88413
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2457 bp 60.36 15.53 96.09
13_1_20cm_3_scaffold_176160
Species: Dyella japonica (50%)
2 3181 bp 59.10 14.91 74.03
13_1_20cm_3_scaffold_107507
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1686 bp 62.75 12.36 100.00
13_1_20cm_3_scaffold_55947
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2221 bp 58.44 16.73 90.09
13_1_20cm_3_scaffold_198062
Species: Gemmatimonas aurantiaca (50%)
2 1286 bp 60.58 16.59 100.31
13_1_20cm_3_scaffold_39328
Species: Gemmatimonas aurantiaca (50%)
2 2557 bp 57.10 11.98 76.26
13_1_20cm_3_scaffold_166248
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1393 bp 63.32 17.30 99.93
13_1_20cm_3_scaffold_6886
Species: R_Gemmatimonadetes_71_11 (50%)
2 4841 bp 62.94 14.26 97.67
13_1_20cm_3_scaffold_105221
Species: Gemmatimonas aurantiaca (50%)
2 1702 bp 60.05 15.48 95.18
13_1_20cm_3_scaffold_205216
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1264 bp 60.76 12.51 98.02
13_1_20cm_3_scaffold_267657
Species: mine drainage metagenome (50%)
2 1941 bp 61.67 14.22 76.51
13_1_20cm_3_scaffold_288394
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1034 bp 63.35 15.05 100.39
13_1_20cm_3_scaffold_285169
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1043 bp 63.28 12.03 92.33
13_1_20cm_3_scaffold_274802
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1070 bp 60.09 14.07 100.37
13_1_20cm_3_scaffold_245548
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1152 bp 59.72 12.42 93.49
13_1_20cm_3_scaffold_205459
Species: Gemmatimonas aurantiaca (100%)
2 2314 bp 61.02 12.69 85.70
13_1_20cm_3_scaffold_34716
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2688 bp 63.28 13.73 99.78
Displaying items 201-250 of 298 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.