ggKbase home page
Advanced Search
Search Help

13_1_20CM_3_Fungi_48_4

13_1_20CM_3_Ascomycota_48_4
In projects: 13_1_20CM_3  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Ascomycota  →  Fungi

Metagenomic Context

Parent: 13_1_20cm_3_UNK

Properties

Avg. coverage: 4.47 Longest contig: 23.20 Kbp Bin length: 18.11 Mbp GC content: 47.69 %
Contigs count: 8966 Features count: 20345 rRNAs count: 5 tRNAs count: 17

Genome completeness

partial RP 29 / 55 MC: 10 BSCG 5 / 51 MC: 2 ASCG 17 / 38 MC: 9

Description

All Fungi

Displaying items 51-100 of 8966 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_3_scaffold_373403
Species: Rhizophagus irregularis (100%)
2 1391 bp 38.17 8.12 101.15
13_1_20cm_3_scaffold_142624
Species: Endocarpon pusillum (50%)
2 1492 bp 50.40 2.52 101.14
13_1_20cm_3_scaffold_174236
Species: Sclerotinia sclerotiorum (50%)
2 1363 bp 27.29 8.66 101.03
13_1_20cm_3_scaffold_204060
Species: Endocarpon pusillum (50%)
2 1268 bp 53.47 3.76 101.03
13_1_20cm_3_scaffold_32552
Species: Endocarpon pusillum (50%)
2 2756 bp 52.65 3.73 101.02
13_1_20cm_3_scaffold_123905
Species: Saitoella complicata (100%)
2 1586 bp 45.27 3.17 101.01
13_1_20cm_3_scaffold_159600
Species: Endocarpon pusillum (100%)
2 1420 bp 50.92 3.54 100.99
13_1_20cm_3_scaffold_295975
Species: Nectria haematococca (50%)
2 1016 bp 51.38 2.72 100.98
13_1_20cm_3_scaffold_105515
Species: Rasamsonia emersonii (50%)
2 2353 bp 50.96 3.84 100.85
13_1_20cm_3_scaffold_259325
Species: Talaromyces stipitatus (50%)
2 1113 bp 49.60 3.38 100.81
13_1_20cm_3_scaffold_32583
Species: Coccidioides posadasii (50%)
2 2755 bp 47.37 3.28 100.73
13_1_20cm_3_scaffold_91694
Species: Endocarpon pusillum (50%)
2 1805 bp 52.30 4.17 100.72
13_1_20cm_3_scaffold_151941
Species: Endocarpon pusillum (50%)
2 1451 bp 51.41 4.15 100.69
13_1_20cm_3_scaffold_66270
Species: Chaetomium globosum (50%)
2 2069 bp 48.57 3.64 100.63
13_1_20cm_3_scaffold_192168
Species: Paxillus involutus (50%)
2 1303 bp 48.12 2.70 100.61
13_1_20cm_3_scaffold_93305
Species: Mortierella verticillata (50%)
2 1792 bp 49.94 3.78 100.61
13_1_20cm_3_scaffold_240291
Species: Cladophialophora bantiana (50%)
2 1849 bp 49.49 3.80 100.59
13_1_20cm_3_scaffold_97122
Species: Saitoella complicata (100%)
2 1761 bp 45.94 4.70 100.51
13_1_20cm_3_scaffold_147723
Species: Exophiala spinifera (50%)
2 1469 bp 51.06 2.56 100.48
13_1_20cm_3_scaffold_159014
Species: Phaeomoniella chlamydospora (50%)
2 1422 bp 53.80 2.65 100.42
13_1_20cm_3_scaffold_42236
Species: Saitoella complicata (50%)
4 2484 bp 45.01 2.83 100.36
13_1_20cm_3_scaffold_243607
Species: Exophiala sideris (50%)
2 1157 bp 50.04 2.39 100.35
13_1_20cm_3_scaffold_220906
Species: Exophiala mesophila (50%)
2 1220 bp 51.89 3.50 100.33
13_1_20cm_3_scaffold_288155
Species: Phaeomoniella chlamydospora (66.67%)
3 1035 bp 53.24 4.12 100.29
13_1_20cm_3_scaffold_61992
Species: Talaromyces marneffei (50%)
2 3802 bp 55.08 6.47 100.29
13_1_20cm_3_scaffold_263413
Species: Sclerotinia sclerotiorum (50%)
2 1101 bp 43.78 4.10 100.27
13_1_20cm_3_scaffold_257238
Species: Paracoccidioides sp. 'lutzii' (50%)
2 1119 bp 48.79 3.36 100.27
13_1_20cm_3_scaffold_52973
Species: Endocarpon pusillum (50%)
2 2271 bp 50.99 3.54 100.26
13_1_20cm_3_scaffold_248718
Species: Rhizophagus irregularis (100%)
2 1143 bp 26.42 2.64 100.26
13_1_20cm_3_scaffold_226222
Species: marine sediment metagenome (50%)
2 1206 bp 66.00 9.57 100.25
13_1_20cm_3_scaffold_218567
Species: Rhinocladiella mackenziei (50%)
2 1227 bp 54.36 3.48 100.24
13_1_20cm_3_scaffold_212018
Species: Erysiphe necator (50%)
2 1245 bp 46.18 5.64 100.24
13_1_20cm_3_scaffold_195448
Species: Aspergillus niger (50%)
2 1293 bp 67.98 3.30 100.23
13_1_20cm_3_scaffold_99674
Species: Rhizophagus irregularis (100%)
2 1742 bp 41.56 8.07 100.23
13_1_20cm_3_scaffold_92519
Species: Endocarpon pusillum (100%)
2 2407 bp 49.40 2.92 100.21
13_1_20cm_3_scaffold_72658
Species: Rhizophagus irregularis (50%)
2 1991 bp 41.54 12.35 100.20
13_1_20cm_3_scaffold_218232
Species: Endocarpon pusillum (50%)
2 2638 bp 49.77 3.81 100.19
13_1_20cm_3_scaffold_374912
Species: Fonsecaea multimorphosa (50%)
2 1587 bp 50.03 3.95 100.19
13_1_20cm_3_scaffold_228294
Species: Trichosporon asahii (50%)
2 2210 bp 52.99 9.54 100.18
13_1_20cm_3_scaffold_249477
Species: Endocarpon pusillum (100%)
2 1141 bp 49.87 2.20 100.18
13_1_20cm_3_scaffold_99099
Species: Rhizophagus irregularis (66.67%)
3 1746 bp 43.87 6.18 100.17
13_1_20cm_3_scaffold_95586
Species: Endocarpon pusillum (50%)
2 1773 bp 52.96 2.83 100.17
13_1_20cm_3_scaffold_226972
Species: Rhizopus microsporus (50%)
2 1204 bp 58.64 6.88 100.17
13_1_20cm_3_scaffold_63344
Species: Serpula lacrymans (50%)
2 2109 bp 45.95 4.28 100.14
13_1_20cm_3_scaffold_143323
Species: Rhinocladiella mackenziei (50%)
2 1489 bp 54.06 4.21 100.13
13_1_20cm_3_scaffold_110538
Species: Endocarpon pusillum (50%)
2 1666 bp 49.40 2.11 100.12
13_1_20cm_3_scaffold_192892
Species: Lygus hesperus (50%)
2 1765 bp 49.75 28.58 100.11
13_1_20cm_3_scaffold_15065
Species: Endocarpon pusillum (100%)
2 3668 bp 51.77 3.28 100.11
13_1_20cm_3_scaffold_59134
Species: Blastomyces dermatitidis (50%)
2 2170 bp 70.23 6.13 100.09
13_1_20cm_3_scaffold_56139
Species: Phaeomoniella chlamydospora (50%)
2 2218 bp 53.97 4.64 100.09
Displaying items 51-100 of 8966 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.