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13_1_20cm_3_scaffold_3353_3

Organism: 13_1_20CM_3_Actinobacteria_71_11

partial RP 40 / 55 MC: 3 BSCG 35 / 51 MC: 4 ASCG 12 / 38 MC: 5
Location: 1893..2546

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Streptomyces cattleya (strain ATCC 35852 / DSM 46488 / JCM 4925 / NBRC 14057 / NRRL 8057) RepID=F8JJ62_STREN similarity UNIREF
DB: UNIREF100
  • Identity: 44.0
  • Coverage: 248.0
  • Bit_score: 171
  • Evalue 1.20e-39
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:AJT69626.1}; TaxID=1403539 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces ly UNIPROT
DB: UniProtKB
  • Identity: 41.9
  • Coverage: 246.0
  • Bit_score: 172
  • Evalue 5.70e-40
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 41.9
  • Coverage: 246.0
  • Bit_score: 172
  • Evalue 1.10e-40

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Taxonomy

Streptomyces lydicus → Streptomyces → Streptomycetales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 654
ATGTCGACGGGAGTCGCATNNNNNNNCCTCATTGGAGGCTGTGCCGCTACCGCCAGCGCCAATCCGGCCGCGTGGCACCAACCGGCCGGCGCGTCCGCCCCCGCCACGGATCCGTCGACCGCCGGGTCACCCTCCGGCGACCCGACTCCGTCGGCGTCGACGCCGCCTGCCTCGGCACCGGCCGCCAAGCCGGGCACGAACACCAAGCCGGCTCCCCCGCCGGCCGCCAGCGGTCTCGTCGGGCAACTGCTCGCCCAGGTCAACGACCTGCGGTCGCAGAACGGGCTGCCGCCGCTCAAGCTCGCCAACGGGCTGAACGCCAGCGCCCACAAGCACAACCTGGAGATGGCCAAGCCCGGCTGCGGCCTGTCCCACCAGTGCCCCGGCGAACCGGACCTCGGCACGCGCATCAGGGCGCAGGGCGTCAACTGGCACTCGGCCGGCGAGAACTGCGGCTACTCCGGGCCGCACGCCAACACCCAGTCCGAAATGCTGGGCGCCGCCAGGGGGCTCACCATGTCCATGTACAACGAGAAGGCGCCGAACGACGGGCACCGGCGCAACCTGCTCAGCAAGGGCTTCACGATGATCGGCATCGACGTGTACCGGGACGACAGCGGCCGGGTCTGGCTGACCCAGGACTTCGCCAGCTGA
PROTEIN sequence
Length: 218
MSTGVAXXXLIGGCAATASANPAAWHQPAGASAPATDPSTAGSPSGDPTPSASTPPASAPAAKPGTNTKPAPPPAASGLVGQLLAQVNDLRSQNGLPPLKLANGLNASAHKHNLEMAKPGCGLSHQCPGEPDLGTRIRAQGVNWHSAGENCGYSGPHANTQSEMLGAARGLTMSMYNEKAPNDGHRRNLLSKGFTMIGIDVYRDDSGRVWLTQDFAS*