ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 6.92 Longest contig: 118.83 Kbp Bin length: 627.21 Mbp GC content: 62.89 %

Contigs count: 305424 Features count: 841509 rRNAs count: 69 tRNAs count: 5835

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 305201-305250 of 305424 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_3_scaffold_195971 Class: Deltaproteobacteria (66.67%)	3	1292 bp	65.94	5.25	108.90
13_1_20cm_3_scaffold_223902 Species: Nocardia brasiliensis (50%)	2	1212 bp	74.01	6.63	108.91
13_1_20cm_3_scaffold_385220 Species: Williamsia sp. D3 (66.67%)	3	1509 bp	70.71	13.31	108.95
13_1_20cm_3_scaffold_282597 Species: Pedosphaera parvula (50%)	2	1049 bp	54.24	7.42	108.96
13_1_20cm_3_scaffold_283832 Species: RBG_16_Actinobacteria_67_10_curated (50%)	2	1046 bp	70.17	3.60	108.99
13_1_20cm_3_scaffold_115454 Species: Sphaerobacter thermophilus (50%)	2	1635 bp	73.27	4.45	108.99
13_1_20cm_3_scaffold_263404 Species: Conexibacter woesei (50%)	2	1101 bp	70.75	3.42	108.99
13_1_20cm_3_scaffold_220247 Class: Actinobacteria (66.67%)	3	1222 bp	73.16	5.55	109.00
13_1_20cm_3_scaffold_212408 Species: Conexibacter woesei (100%)	2	1244 bp	69.45	4.44	109.00
13_1_20cm_3_scaffold_290498 Species: Patulibacter medicamentivorans (50%)	2	1029 bp	69.00	5.12	109.04
13_1_20cm_3_scaffold_284876	3	1593 bp	72.88	11.03	109.04
13_1_20cm_3_scaffold_273556	2	1073 bp	63.19	7.02	109.04
13_1_20cm_3_scaffold_291921 Species: Nocardiopsis alba (50%)	2	1026 bp	71.64	5.63	109.06
13_1_20cm_3_scaffold_270525 Species: Chthoniobacter flavus (50%)	2	1081 bp	59.57	3.02	109.07
13_1_20cm_3_scaffold_105201 Species: RLO_Betaproteobacteria_65_14 (50%)	2	1702 bp	62.51	2.80	109.11
13_1_20cm_3_scaffold_261886 Species: Chloroflexus aggregans (50%)	2	1105 bp	68.69	3.63	109.14
13_1_20cm_3_scaffold_277495 Species: RBG_16_Actinobacteria_68_12_curated (100%)	3	1797 bp	70.34	5.73	109.18
13_1_20cm_3_scaffold_248529 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1143 bp	67.72	6.59	109.19
13_1_20cm_3_scaffold_294895 Species: BJP_IG2102_Coriobacteriales_64_17 (50%)	2	1019 bp	69.48	10.10	109.23
13_1_20cm_3_scaffold_118762 Species: Pedosphaera parvula (50%)	2	1615 bp	60.19	4.97	109.23
13_1_20cm_3_scaffold_246990	3	1148 bp	59.23	2.41	109.23
13_1_20cm_3_scaffold_287098 Domain: Bacteria (66.67%)	3	1038 bp	57.51	5.56	109.25
13_1_20cm_3_scaffold_246099 Species: Gemmatimonadetes bacterium KBS708 (66.67%)	3	1150 bp	60.61	6.55	109.30
13_1_20cm_3_scaffold_274818 Domain: Bacteria (66.67%)	3	1070 bp	70.84	4.69	109.35
13_1_20cm_3_scaffold_378254 Species: Frankia symbiont of Datisca glomerata (50%)	2	1594 bp	72.58	5.51	109.35
13_1_20cm_3_scaffold_122494 Species: uncultured bacterium (100%)	2	1594 bp	60.85	5.83	109.35
13_1_20cm_3_scaffold_210166 Species: Renibacterium salmoninarum (50%)	2	1251 bp	64.35	4.21	109.35
13_1_20cm_3_scaffold_229703	3	1196 bp	68.23	2.73	109.37
13_1_20cm_3_scaffold_136185 Species: Pedosphaera parvula (50%)	2	1522 bp	59.46	7.26	109.40
13_1_20cm_3_scaffold_276880 Species: CSP1_5_NC10 (50%)	2	1064 bp	71.15	5.66	109.40
13_1_20cm_3_scaffold_295793	4	1017 bp	55.95	2.47	109.44
13_1_20cm_3_scaffold_416552 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	1318 bp	66.69	11.05	109.48
13_1_20cm_3_scaffold_220403 Species: candidate division Zixibacteria (50%)	2	1222 bp	54.66	5.34	109.49
13_1_20cm_3_scaffold_229418 Species: Conexibacter woesei (50%)	2	1197 bp	71.85	7.97	109.52
13_1_20cm_3_scaffold_307842 Species: RBG_19FT_COMBO_Armatimonadetes_69_19_curated (50%)	2	1802 bp	65.32	14.21	109.55
13_1_20cm_3_scaffold_193047 Domain: Bacteria (66.67%)	3	1980 bp	68.13	5.83	109.55
13_1_20cm_3_scaffold_97248 Domain: Bacteria (66.67%)	3	1760 bp	70.85	6.85	109.60
13_1_20cm_3_scaffold_110642 Species: marine actinobacterium MedAcidi-G2B (50%)	2	2028 bp	69.67	9.04	109.62
13_1_20cm_3_scaffold_265978 Species: R_Acidobacteria_65_29 (100%)	2	1094 bp	66.00	2.98	109.69
13_1_20cm_3_scaffold_257456 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (66.67%)	3	1742 bp	65.33	8.07	109.70
13_1_20cm_3_scaffold_147835 Species: R_Betaproteobacteria_62_17 (50%)	2	1468 bp	61.10	3.76	109.74
13_1_20cm_3_scaffold_155812	3	1435 bp	74.70	5.07	109.76
13_1_20cm_3_scaffold_262240 Order: Rhizobiales (66.67%)	3	1104 bp	67.48	7.05	109.78
13_1_20cm_3_scaffold_397358 Species: Nocardia cyriacigeorgica (50%)	2	1358 bp	72.90	6.84	109.79
13_1_20cm_3_scaffold_230478 Species: Cystobacter fuscus (50%)	2	1194 bp	71.19	3.78	109.80
13_1_20cm_3_scaffold_186304 Species: Oscillatoriales cyanobacterium JSC-12 (50%)	2	1322 bp	71.48	2.85	109.83
13_1_20cm_3_scaffold_189813 Species: Actinoplanes friuliensis (50%)	2	1311 bp	64.99	4.79	109.84
13_1_20cm_3_scaffold_327522 Species: Celeribacter baekdonensis (50%)	2	1562 bp	70.42	6.27	109.86
13_1_20cm_3_scaffold_266809 Species: GWB2_Ignavibacteria_35_6b_curated (50%)	2	1092 bp	59.80	4.60	109.89
13_1_20cm_3_scaffold_146491 Species: Thermobaculum terrenum (50%)	2	1474 bp	69.67	6.13	109.91

Displaying items 305201-305250 of 305424 in total

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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