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13_1_20cm_4_scaffold_12528_4

Organism: 13_1_20CM_4_Rokubacteria_70_13

partial RP 21 / 55 MC: 3 BSCG 25 / 51 MC: 3 ASCG 4 / 38 MC: 2
Location: 2343..2909

Top 3 Functional Annotations

Value Algorithm Source
rpoE; RNA polymerase, sigma-E factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_12_FULL_Rokubacteria_71_22_curated UNIPROT
DB: UniProtKB
  • Identity: 69.2
  • Coverage: 185.0
  • Bit_score: 269
  • Evalue 3.90e-69
RNA polymerase, sigma-24 subunit, ECF subfamily id=4367557 bin=GWA2_Methylomirabilis_73_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis similarity UNIREF
DB: UNIREF100
  • Identity: 66.5
  • Coverage: 185.0
  • Bit_score: 257
  • Evalue 1.40e-65
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 40.9
  • Coverage: 186.0
  • Bit_score: 123
  • Evalue 6.90e-26

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Taxonomy

RLO_Rokubacteria_71_22 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 567
GTGGAGCTCTCGGACGAGGTGCTGTGCCGGCGCACGGCCGAGCGCGACGAGGCGGCGTTTGACGCCCTCGTCGCGCGCTACCAGGGGCGCGCGTACCGGCTCGCATGGTCCATCGTGCGAAACGCCGAGGACGCGCGCGACCTGTCGCAGGAGGCCTTCATCCGGGTCTTCCAGTCGGCGGGGCGCTTCGACGGCCGCTCGAAGTTCTCGACCTGGTTCTACCGCATCGTCGTCAACCTGTGCCTCGATCAGCGGCGCAAGCATCGGGGCTGGAAGCTCTGGGTGCGTGACGAGGGCGATCCCGAATCGCACGAGCCACTCCTCGACCGCCAGCCCGCACCCTCCCAGGACCCCGTGGACACGATCGGACGGGAGCGGACGTTGAAGCGGCTCTGGGAGGCCGTGGGCCGGCTCGCGCCGCAGCAGCGCGCGGCCGTGATCCTTCAGGTACAGGAGGAGCTGCCGACGCCGGAGATCGCGGCGGTGCTGAAGTGCTCGGAGGCAACGGTGCGGGTGCACCTCCACCGCGCGCTCACAACGCTCAGGAAGACGATGGGGACGACCTGA
PROTEIN sequence
Length: 189
VELSDEVLCRRTAERDEAAFDALVARYQGRAYRLAWSIVRNAEDARDLSQEAFIRVFQSAGRFDGRSKFSTWFYRIVVNLCLDQRRKHRGWKLWVRDEGDPESHEPLLDRQPAPSQDPVDTIGRERTLKRLWEAVGRLAPQQRAAVILQVQEELPTPEIAAVLKCSEATVRVHLHRALTTLRKTMGTT*