ggKbase | organisms

13_1_20CM_4_Rokubacteria_70_13

In projects: 13_1_20CM_4 | angelo_ncbi_2016 | rokubacteria_ggkbase | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Rokubacteria → Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 13.21 Longest contig: 12.61 Kbp Bin length: 650.91 Kbp GC content: 70.38 %

Contigs count: 256 Features count: 814 rRNAs count: 0 tRNAs count: 7

Genome completeness

partial RP 21 / 55 MC: 3 BSCG 25 / 51 MC: 3 ASCG 4 / 38 MC: 2

Description

formerly known as 13_1_20CM_4_temporary

Displaying items 151-200 of 256 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_4_scaffold_142146 Species: R_Rokubacteria_71_18 (50%)	2	1393 bp	72.00	12.07	99.50
13_1_20cm_4_scaffold_38431 Species: Pyrinomonas methylaliphatogenes (50%)	2	2441 bp	56.25	17.79	96.11
13_1_20cm_4_scaffold_73231 Species: RLO_Rokubacteria_71_22 (100%)	2	1855 bp	71.54	12.18	98.65
13_1_20cm_4_scaffold_31592 Species: RLO_RIF_CHLX_71_12 (100%)	2	2651 bp	65.33	13.26	98.91
13_1_20cm_4_scaffold_258516 Species: RBG_13_Chloroflexi_60_13_curated (50%)	2	1025 bp	66.73	13.71	100.10
13_1_20cm_4_scaffold_220951 Species: GWC2_Rokubacteria_70_16_curated (50%)	2	1132 bp	59.19	14.41	99.38
13_1_20cm_4_scaffold_242653 Species: RLO_Entotheonella_69_37 (50%)	2	1069 bp	68.01	18.78	100.19
13_1_20cm_4_scaffold_224662 Species: Candidatus Entotheonella sp. TSY2 (50%)	2	1121 bp	63.25	11.87	98.75
13_1_20cm_4_scaffold_238487 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1849 bp	68.20	12.35	87.94
13_1_20cm_4_scaffold_244939 Species: RLO_Betaproteobacteria_65_14 (100%)	2	1062 bp	69.02	17.02	100.28
13_1_20cm_4_scaffold_262910 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1013 bp	73.05	13.63	92.10
13_1_20cm_4_scaffold_206924 Species: R_Rokubacteria_73_56 (50%)	2	1173 bp	71.87	14.76	100.00
13_1_20cm_4_scaffold_45838 Species: R_Rokubacteria_73_56 (100%)	2	2267 bp	72.61	11.74	98.99
13_1_20cm_4_scaffold_45378 Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (50%)	2	2278 bp	61.28	12.34	93.11
13_1_20cm_4_scaffold_53672 Species: R_Acidobacteria_61_28 (50%)	2	2119 bp	69.09	12.67	98.82
13_1_20cm_4_scaffold_250470 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	1047 bp	72.87	13.90	99.71
13_1_20cm_4_scaffold_113855 Species: RLO_Rokubacteria_71_22 (50%)	2	1536 bp	70.64	15.52	100.20
13_1_20cm_4_scaffold_54375 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	2107 bp	71.43	14.06	98.67
13_1_20cm_4_scaffold_141965 Species: R_Rokubacteria_73_56 (50%)	2	1394 bp	71.66	12.24	100.29
13_1_20cm_4_scaffold_182287 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	1247 bp	75.30	13.49	91.66
13_1_20cm_4_scaffold_42404 Species: R_Rokubacteria_73_56 (100%)	2	2343 bp	69.95	12.53	100.38
13_1_20cm_4_scaffold_116630 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1520 bp	72.37	14.20	98.68
13_1_20cm_4_scaffold_56692 Species: RLO_Rokubacteria_71_22 (50%)	2	2070 bp	77.00	11.88	68.41
13_1_20cm_4_scaffold_252802 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1737 bp	70.41	13.29	68.39
13_1_20cm_4_scaffold_173085 Species: RLO_Deltaproteobacteria_60_19 (50%)	2	1277 bp	65.54	12.78	99.37
13_1_20cm_4_scaffold_25488 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	2900 bp	72.41	13.16	99.10
13_1_20cm_4_scaffold_137836 Species: Rubrobacter radiotolerans (50%)	2	1412 bp	67.78	12.62	92.42
13_1_20cm_4_scaffold_258335 Species: GWA2_Rokubacteria_70_23_curated (50%)	2	1025 bp	69.37	11.75	88.39
13_1_20cm_4_scaffold_184617 Species: Candidatus Entotheonella sp. TSY1 (50%)	2	1240 bp	72.26	13.36	95.32
13_1_20cm_4_scaffold_170333 Species: RLO_Gemmatimonadetes_68_9 (50%)	2	1286 bp	72.47	13.66	97.05
13_1_20cm_4_scaffold_188307 Species: R_Rokubacteria_73_56 (50%)	2	1228 bp	74.27	12.47	95.03
13_1_20cm_4_scaffold_183239 Species: RLO_Rokubacteria_71_22 (100%)	2	1244 bp	71.95	14.12	100.32
13_1_20cm_4_scaffold_107921 Species: R_Rokubacteria_68_19 (50%)	2	1572 bp	68.32	11.82	87.79
13_1_20cm_4_scaffold_57405 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	2058 bp	67.44	13.66	99.56
13_1_20cm_4_scaffold_120343 Species: R_Rokubacteria_73_56 (50%)	2	1500 bp	71.00	11.88	93.40
13_1_20cm_4_scaffold_77456 Species: GWA2_Rokubacteria_73_35_curated (100%)	2	1811 bp	66.43	13.31	99.89
13_1_20cm_4_scaffold_74002 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1846 bp	69.99	13.05	96.21
13_1_20cm_4_scaffold_256288 Species: RLO_PLX_64_10 (50%)	2	1031 bp	71.48	11.69	100.39
13_1_20cm_4_scaffold_43822 Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)	2	2310 bp	65.24	14.56	96.49
13_1_20cm_4_scaffold_233017 Species: R_Rokubacteria_73_56 (50%)	2	1746 bp	69.53	12.51	100.00
13_1_20cm_4_scaffold_248460 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1052 bp	72.24	11.93	100.10
13_1_20cm_4_scaffold_28808 Species: R_Rokubacteria_71_18 (50%)	2	2758 bp	73.28	11.92	93.87
13_1_20cm_4_scaffold_70324 Species: Bradyrhizobium sp. LTSPM299 (50%)	2	1889 bp	65.96	17.14	89.89
13_1_20cm_4_scaffold_269260 Species: R_Rokubacteria_73_56 (50%)	2	1695 bp	74.40	12.14	98.23
13_1_20cm_4_scaffold_107944 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1572 bp	70.29	14.21	97.71
13_1_20cm_4_scaffold_82080 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1767 bp	69.67	17.19	95.93
13_1_20cm_4_scaffold_93372 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1672 bp	72.31	14.41	95.81
13_1_20cm_4_scaffold_253543 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1038 bp	65.41	12.57	96.24
13_1_20cm_4_scaffold_157010 Species: R_Rokubacteria_73_56 (100%)	2	1333 bp	69.09	12.62	99.93
13_1_20cm_4_scaffold_127060 Species: R_Rokubacteria_68_19 (50%)	2	1465 bp	69.90	14.56	94.81

Displaying items 151-200 of 256 in total

13_1_20CM_4_Rokubacteria_70_13

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_20CM_4_Rokubacteria_70_13

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

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