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13_1_20CM_4_Euryarchaeota_52_7

13_1_20CM_4_Archaea_52_8
In projects: 13_1_20CM_4  |  archaea_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Archaea

Taxonomy override: Euryarchaeota

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 7.57 Longest contig: 18.87 Kbp Bin length: 1.57 Mbp GC content: 52.36 %
Contigs count: 883 Features count: 1897 rRNAs count: 0 tRNAs count: 5

Genome completeness

partial RP 20 / 55 MC: 13 BSCG 7 / 51 MC: 3 ASCG 21 / 38 MC: 16

Description

Low GC Euryarchaeota-CB

Displaying items 1-50 of 883 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_174040
Species: Aciduliprofundum boonei (50%)
2 1274 bp 49.92 2.96 105.50
13_1_20cm_4_scaffold_241806
Species: Methanothermobacter marburgensis (50%)
2 1071 bp 53.69 3.05 104.76
13_1_20cm_4_scaffold_265468
Species: Geoglobus ahangari (50%)
2 1007 bp 48.26 5.23 103.08
13_1_20cm_4_scaffold_94309
Species: RIFOXYD1_FULL_Bdellovibrionales_55_31_curated (50%)
2 1665 bp 50.45 11.76 103.06
13_1_20cm_4_scaffold_121676
Species: Methanofollis liminatans (50%)
2 1493 bp 54.86 3.19 102.88
13_1_20cm_4_scaffold_194468
Species: RBG_16_Archaea_50_20_curated (50%)
2 1210 bp 52.81 6.43 102.65
13_1_20cm_4_scaffold_140362
Species: RBG_16_Archaea_50_20_curated (50%)
2 1401 bp 53.10 10.03 102.35
13_1_20cm_4_scaffold_262134
Species: RBG_16_Armatimonadetes_58_9_curated (50%)
2 1015 bp 56.16 5.44 102.27
13_1_20cm_4_scaffold_29257
Species: Thermoplasmatales archaeon Gpl (100%)
3 2740 bp 50.58 9.34 102.26
13_1_20cm_4_scaffold_180392
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1253 bp 54.19 11.22 101.76
13_1_20cm_4_scaffold_109844
Species: Archaeoglobus veneficus (50%)
2 1560 bp 53.27 4.02 101.73
13_1_20cm_4_scaffold_95935
Species: Thermococcus nautili (50%)
2 1653 bp 49.49 3.49 101.63
13_1_20cm_4_scaffold_167238
Species: RBG_16_Archaea_50_20_curated (100%)
2 1296 bp 52.85 8.52 101.62
13_1_20cm_4_scaffold_54834
Species: Methanosarcina mazei (66.67%)
3 2099 bp 55.41 5.50 101.33
13_1_20cm_4_scaffold_151033
Species: RBG_16_Archaea_50_20_curated (100%)
2 1357 bp 51.36 15.35 101.25
13_1_20cm_4_scaffold_218141
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1856 bp 54.69 8.66 101.02
13_1_20cm_4_scaffold_29624
Species: RBG_16_Archaea_50_20_curated (50%)
4 3736 bp 53.29 11.56 101.02
13_1_20cm_4_scaffold_266500
Species: Archaeoglobus veneficus (50%)
2 1004 bp 52.49 8.00 101.00
13_1_20cm_4_scaffold_71739
Species: marine sediment metagenome (66.67%)
3 1872 bp 49.31 4.69 100.96
13_1_20cm_4_scaffold_214003
Species: Methanomethylovorans hollandica (50%)
2 1153 bp 52.91 6.31 100.95
13_1_20cm_4_scaffold_158266
Domain: Archaea (66.67%)
3 1329 bp 49.81 7.37 100.68
13_1_20cm_4_scaffold_233341
Species: Geoglobus ahangari (50%)
2 1095 bp 52.79 9.40 100.55
13_1_20cm_4_scaffold_153453
Species: Corynebacterium efficiens (50%)
2 1347 bp 52.56 5.03 100.45
13_1_20cm_4_scaffold_137016
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1416 bp 52.82 15.07 100.42
13_1_20cm_4_scaffold_85527
Domain: Archaea (66.67%)
3 1736 bp 52.48 5.21 100.40
13_1_20cm_4_scaffold_2970
Domain: Archaea (75%)
8 6701 bp 53.20 9.89 100.33
13_1_20cm_4_scaffold_111570
Species: RBG_16_Bathyarchaeota_48_13_curated (50%)
2 1549 bp 53.97 2.92 100.32
13_1_20cm_4_scaffold_155066
Species: Parcubacteria bacterium GW2011_GWF2_40_69 (50%)
2 1340 bp 55.75 5.06 100.30
13_1_20cm_4_scaffold_137769
Species: Pyrinomonas methylaliphatogenes (50%)
2 1412 bp 55.31 5.16 100.28
13_1_20cm_4_scaffold_241729
Species: Methanoregula formicica (100%)
2 1071 bp 52.19 3.28 100.28
13_1_20cm_4_scaffold_237476
Species: RBG_16_Archaea_50_20_curated (100%)
2 1083 bp 50.69 6.49 100.28
13_1_20cm_4_scaffold_236455
Species: Thermoplasma acidophilum (66.67%)
3 1086 bp 55.52 3.24 100.28
13_1_20cm_4_scaffold_78370
Species: Methanocella paludicola (50%)
2 1802 bp 57.27 5.29 100.22
13_1_20cm_4_scaffold_110376
Species: Methanobacterium sp. MB1 (50%)
2 1557 bp 53.18 6.13 100.19
13_1_20cm_4_scaffold_108500
Species: RBG_16_Archaea_50_20_curated (50%)
2 1569 bp 51.12 5.28 100.19
13_1_20cm_4_scaffold_215917
Species: Pyrinomonas methylaliphatogenes (100%)
2 1147 bp 56.67 3.72 100.17
13_1_20cm_4_scaffold_213865
Species: RBG_16_Archaea_50_20_curated (50%)
2 1153 bp 53.69 2.83 100.17
13_1_20cm_4_scaffold_212019
Species: RBG_16_Acidobacteria_64_8_curated (100%)
2 1159 bp 55.48 2.17 100.17
13_1_20cm_4_scaffold_186355
Species: RBG_13_Bathyarchaeota_38_9_curated (50%)
2 1234 bp 51.30 3.86 100.16
13_1_20cm_4_scaffold_147992
Species: Natrialba aegyptia (50%)
2 1369 bp 54.71 3.48 100.15
13_1_20cm_4_scaffold_146439
Species: Thermoplasmatales archaeon E-plasma (100%)
2 1375 bp 48.95 3.83 100.15
13_1_20cm_4_scaffold_132868
Species: Archaeoglobus sulfaticallidus (50%)
2 1435 bp 54.70 3.15 100.14
13_1_20cm_4_scaffold_66143
Species: Methanoregula formicica (75%)
4 2910 bp 55.53 7.25 100.10
13_1_20cm_4_scaffold_21632
Species: RBG_16_Acidobacteria_64_8_curated (66.67%)
3 3099 bp 54.76 6.07 100.10
13_1_20cm_4_scaffold_219451
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1136 bp 50.35 13.26 100.09
13_1_20cm_4_scaffold_175844
Species: Methanosphaerula palustris (50%)
2 1268 bp 50.63 3.17 100.08
13_1_20cm_4_scaffold_168452
Species: RBG_13_Bathyarchaeota_46_16b_curated (50%)
2 1292 bp 50.85 12.24 100.08
13_1_20cm_4_scaffold_75606
Species: Methanothermus fervidus (50%)
2 1829 bp 53.25 6.72 100.06
13_1_20cm_4_scaffold_54492
Species: Candidatus Magnetobacterium bavaricum (50%)
2 2105 bp 56.06 3.58 100.05
13_1_20cm_4_scaffold_52946
Species: RBG_16_Chloroflexi_50_9_curated (50%)
2 2132 bp 56.71 2.94 100.05
Displaying items 1-50 of 883 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.