ggKbase home page
Advanced Search
Search Help

13_1_20CM_4_Cyanobacteria_61_6

13_1_20CM_4_Bacteria_61_6
In projects: 13_1_20CM_4  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 6.14 Longest contig: 9.28 Kbp Bin length: 5.76 Mbp GC content: 60.73 %
Contigs count: 3730 Features count: 6540 rRNAs count: 0 tRNAs count: 17

Genome completeness

partial RP 5 / 55 MC: 1 BSCG 5 / 51 MC: 1 ASCG 2 / 38 MC: 1

Description

All Cyanos. <1 partial genome-CB

Displaying items 101-150 of 3730 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_104186
Species: BJP_IG2103_Methanoregula_55_19 (50%)
2 1596 bp 57.52 3.62 100.75
13_1_20cm_4_scaffold_129930
Species: Gemmatimonadetes bacterium KBS708 (66.67%)
3 2609 bp 66.62 3.94 100.73
13_1_20cm_4_scaffold_230084
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1105 bp 67.78 3.63 100.72
13_1_20cm_4_scaffold_228986
Species: Calothrix parietina (50%)
2 1108 bp 64.53 4.30 100.72
13_1_20cm_4_scaffold_189732
Phylum: Proteobacteria (60%)
5 2085 bp 69.26 8.07 100.72
13_1_20cm_4_scaffold_223021
Species: Caldatribacterium saccharofermentans (50%)
2 1126 bp 74.78 3.57 100.71
13_1_20cm_4_scaffold_204750
Species: Gloeobacter violaceus (50%)
2 1180 bp 55.93 3.19 100.68
13_1_20cm_4_scaffold_93745
Species: Moorea producens (50%)
2 1669 bp 71.90 8.87 100.66
13_1_20cm_4_scaffold_135601
Species: Gloeobacter violaceus (50%)
2 1422 bp 70.68 3.35 100.63
13_1_20cm_4_scaffold_267273
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1002 bp 53.89 5.01 100.60
13_1_20cm_4_scaffold_247150
Species: RLO_RIF02_62_27 (50%)
2 1056 bp 54.64 6.18 100.57
13_1_20cm_4_scaffold_137380
Phylum: Acidobacteria (66.67%)
3 1414 bp 54.46 3.02 100.57
13_1_20cm_4_scaffold_182296
Species: Gloeobacter kilaueensis (50%)
2 1247 bp 57.66 6.64 100.56
13_1_20cm_4_scaffold_74794
Species: Microcoleus vaginatus (50%)
2 1838 bp 71.87 6.28 100.54
13_1_20cm_4_scaffold_152109
Species: GWC2_Elusimicrobia_64_44_curated (50%)
2 1352 bp 65.01 3.16 100.52
13_1_20cm_4_scaffold_148607
Species: Gloeobacter violaceus (50%)
2 1367 bp 56.25 2.75 100.51
13_1_20cm_4_scaffold_78899
Species: Coleofasciculus chthonoplastes (50%)
2 1797 bp 47.86 3.77 100.50
13_1_20cm_4_scaffold_262331
Species: R_Gemmatimonadetes_71_11 (50%)
2 1015 bp 69.95 7.17 100.49
13_1_20cm_4_scaffold_258861
Species: Opitutus terrae (50%)
2 1024 bp 56.74 3.19 100.49
13_1_20cm_4_scaffold_167292
Species: R_Burkholderiales_67_14 (50%)
2 1296 bp 71.30 7.55 100.46
13_1_20cm_4_scaffold_163784
Species: GWE1_Thiobacillus_62_9_curated (66.67%)
3 1308 bp 65.75 5.37 100.46
13_1_20cm_4_scaffold_234220
Species: Candidatus Solibacter usitatus (50%)
2 1093 bp 55.26 3.90 100.46
13_1_20cm_4_scaffold_160371
Species: RBG_16_Caldithrix_48_16_curated (50%)
2 1320 bp 59.47 8.37 100.46
13_1_20cm_4_scaffold_112587
Species: Nostoc punctiforme (50%)
2 1544 bp 54.15 3.25 100.45
13_1_20cm_4_scaffold_106660
Domain: Bacteria (66.67%)
3 1580 bp 72.97 10.33 100.44
13_1_20cm_4_scaffold_101195
Species: RBG_16_Zixibacteria_43_9_curated (50%)
2 1616 bp 52.72 4.50 100.43
13_1_20cm_4_scaffold_43562
Species: RLO_Deltaproteobacteria_60_19 (50%)
4 2315 bp 73.65 9.32 100.43
13_1_20cm_4_scaffold_141827
Species: Streptomyces cyaneogriseus (50%)
2 1395 bp 64.73 9.18 100.43
13_1_20cm_4_scaffold_27012
Domain: Bacteria (100%)
3 2832 bp 70.16 7.18 100.42
13_1_20cm_4_scaffold_187551
Species: Burkholderia grimmiae (50%)
2 1231 bp 71.24 7.75 100.41
13_1_20cm_4_scaffold_62493
Species: Microcoleus vaginatus (50%)
2 2743 bp 59.61 8.60 100.40
13_1_20cm_4_scaffold_181750
Species: Cyanothece sp. PCC 7425 (50%)
2 1249 bp 52.20 5.02 100.40
13_1_20cm_4_scaffold_266562
Species: Leptolyngbya sp. PCC 7375 (50%)
2 1004 bp 61.45 6.75 100.40
13_1_20cm_4_scaffold_265425
Species: Gloeobacter violaceus (50%)
2 1007 bp 67.13 8.23 100.40
13_1_20cm_4_scaffold_73613
Species: RBG_16_Planctomycetes_55_9_curated (50%)
2 1850 bp 57.19 5.43 100.38
13_1_20cm_4_scaffold_243142
Species: RBG_16_Euryarchaeota_68_13_curated (100%)
2 1067 bp 65.79 14.58 100.37
13_1_20cm_4_scaffold_102350
Domain: Bacteria (66.67%)
3 1608 bp 69.09 7.34 100.37
13_1_20cm_4_scaffold_236805
Species: RBG_19FT_COMBO_Deltaproteobacteria_46_12_curated (50%)
2 1085 bp 65.90 3.47 100.37
13_1_20cm_4_scaffold_302703
Phylum: Cyanobacteria (66.67%)
3 1644 bp 69.53 4.73 100.37
13_1_20cm_4_scaffold_229624
Species: Chroococcidiopsis thermalis (50%)
2 1106 bp 61.39 4.08 100.36
13_1_20cm_4_scaffold_219408
Species: Synechococcus sp. KORDI-49 (50%)
2 1136 bp 69.81 3.31 100.35
13_1_20cm_4_scaffold_85720
Species: Gloeobacter violaceus (50%)
2 1734 bp 59.11 7.38 100.35
13_1_20cm_4_scaffold_211463
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1160 bp 65.60 2.16 100.35
13_1_20cm_4_scaffold_209297
Species: RBG_16_Deltaproteobacteria_50_11_curated (50%)
2 1166 bp 72.81 4.09 100.34
13_1_20cm_4_scaffold_127019
Species: RBG_19FT_COMBO_Actinobacteria_70_19_curated (100%)
2 1465 bp 70.31 3.08 100.34
13_1_20cm_4_scaffold_196015
Species: Pyrinomonas methylaliphatogenes (50%)
2 1205 bp 55.68 4.79 100.33
13_1_20cm_4_scaffold_195218
Species: Nitrosococcus watsonii (50%)
2 1208 bp 50.91 2.08 100.33
13_1_20cm_4_scaffold_38941
Species: RBG_13_Chloroflexi_66_10_curated (50%)
2 2428 bp 67.75 7.75 100.33
13_1_20cm_4_scaffold_183240
Species: R_RIF_OD1_09_49_22 (50%)
2 1244 bp 70.02 7.06 100.32
13_1_20cm_4_scaffold_105867
Species: Chroococcidiopsis thermalis (50%)
2 1585 bp 56.40 7.92 100.32
Displaying items 101-150 of 3730 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.