ggKbase | organisms

Advanced Search

13_1_20CM_4_Actinobacteria_68_12

In projects: 13_1_20CM_4 | angelo_ncbi_2016 | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Actinobacteria → Actinobacteria → Bacteria

Metagenomic Context

Parent: 13_1_20cm_4_UNK

Properties

Avg. coverage: 12.33 Longest contig: 29.92 Kbp Bin length: 1.43 Mbp GC content: 68.30 %

Contigs count: 109 Features count: 1545 rRNAs count: 0 tRNAs count: 12

Genome completeness

partial RP 8 / 55 BSCG 11 / 51 ASCG 6 / 38

Description

12cls partial actinobacterium

Displaying items 101-109 of 109 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_20cm_4_scaffold_6789 Domain: Bacteria (50%)	12	8004 bp	68.73	11.32	83.96
13_1_20cm_4_scaffold_6799 Phylum: Actinobacteria (50%)	8	8747 bp	67.15	10.45	82.52
13_1_20cm_4_scaffold_8560 Phylum: Actinobacteria (50%)	20	15117 bp	68.53	13.28	82.16
13_1_20cm_4_scaffold_3067 Domain: Bacteria (64.71%)	17	11923 bp	64.58	13.94	81.55
13_1_20cm_4_scaffold_7992 Domain: Bacteria (53.85%)	13	11998 bp	63.17	6.17	80.14
13_1_20cm_4_scaffold_10329 Domain: Bacteria (100%)	10	9534 bp	68.31	13.80	79.83
13_1_20cm_4_scaffold_3401 Phylum: Actinobacteria (50%)	10	12319 bp	67.72	11.33	76.42
13_1_20cm_4_scaffold_3698 Phylum: Actinobacteria (53.33%)	15	17434 bp	67.47	10.93	73.51
13_1_20cm_4_scaffold_1431	11	9320 bp	64.83	7.08	69.14

Displaying items 101-109 of 109 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

ggKBase is a service designed to assist in analyzing and integrating *omic data (e.g. metagenomics, proteomics, etc). The source code for ggKBase will be made available as an open source project.
You are encouraged to contact the development staff with issues related to usage of ggKBase. The ggKBase development staff as well as the members of the Banfield lab at the University of California, Berkeley, are not available to support outside research/computation requests.
We aim to make ggKBase the best resource possible and to make it accurate and available at all times; however, we cannot guarantee the correctness of any results, validity or integrity of the data, or the availability of the service: We cannot be held responsible for decisions made, losses suffered, or damages that resulted from using data from ggKBase.
We respect our user’s privacy and will not share any user registration details with anyone other than the ggKBase developers.
ggKBase is a social web site – it has mechanisms to share results and comments with other users of the system. As a registered user of ggKBase, you agree to respect the rights of other users and conduct yourself in a professional manner with courtesy and collegiality towards your fellow users. We reserve the right to delete users found not upholding these standards.
We reserve the right to reject inappropriate data submissions. As a User, you agree not to submit data that is not your own and you agree that any data you do submit is being submitted specifically for the purposes of analyzing using ggKBase.
ggKBase and its underlying servers and systems are properly administrated and backed up. However, ggKBase is not responsible for data loss or work loss as a result of system or hardware failures or criminal activity.
We reserve the right to perform additional data analysis to improve ggKBase, and we will not release user-contributed data without consent of the user.
Users of ggKBase are expected to properly cite any published work.
We reserve the right at any time to modify the Terms of Service for ggKBase. Modifications to these Terms will be effective immediately and we will make a reasonable effort to contact users via email of any changes. If you continue using ggKBase after an amendment to the Terms of Service, we assume you have read and accepted the changes.