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13_1_20cm_4_UNK

In projects: 13_1_20CM_4  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 7.44 Longest contig: 97.66 Kbp Bin length: 506.96 Mbp GC content: 63.54 %
Contigs count: 256357 Features count: 686151 rRNAs count: 48 tRNAs count: 4715

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 451-500 of 256357 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_20cm_4_scaffold_196419
Domain: Bacteria (66.67%)
3 1204 bp 69.85 4.17 105.90
13_1_20cm_4_scaffold_164290 3 1306 bp 54.90 4.42 105.90
13_1_20cm_4_scaffold_224043
Species: R_Acidobacteria_65_29 (50%)
2 1122 bp 56.86 4.25 105.88
13_1_20cm_4_scaffold_266950 3 1003 bp 71.49 3.00 105.88
13_1_20cm_4_scaffold_133172
Order: Micromonosporales (75%)
4 2111 bp 72.29 7.97 105.87
13_1_20cm_4_scaffold_157277
Species: bacterium symbiont of Theonella swinhoei pTSMAC1 (50%)
2 1332 bp 59.83 4.90 105.86
13_1_20cm_4_scaffold_78858 3 1797 bp 75.74 3.35 105.84
13_1_20cm_4_scaffold_198194
Species: BJP_IG2157_Anaerolineales_55_23 (50%)
2 1199 bp 71.48 9.63 105.84
13_1_20cm_4_scaffold_139214
Domain: Bacteria (66.67%)
3 1406 bp 68.21 5.71 105.83
13_1_20cm_4_scaffold_143141
Class: Alphaproteobacteria (60%)
5 2299 bp 61.51 4.26 105.83
13_1_20cm_4_scaffold_73284
Domain: Bacteria (75%)
4 1854 bp 51.40 3.66 105.82
13_1_20cm_4_scaffold_154915
Species: Salinispora arenicola (50%)
2 1341 bp 72.04 12.54 105.82
13_1_20cm_4_scaffold_243419
Species: RLO_Betaproteobacteria_65_14 (66.67%)
3 1066 bp 67.64 17.42 105.82
13_1_20cm_4_scaffold_137961
Species: Bacillus vireti (50%)
2 1412 bp 66.29 4.62 105.81
13_1_20cm_4_scaffold_189253 2 1225 bp 66.86 7.58 105.80
13_1_20cm_4_scaffold_50578
Domain: Bacteria (66.67%)
3 2175 bp 71.40 16.96 105.79
13_1_20cm_4_scaffold_97479
Species: RBG_16_RIF_CHLX_70_13_curated (50%)
2 1642 bp 71.32 6.73 105.79
13_1_20cm_4_scaffold_241360
Species: Conexibacter woesei (100%)
3 1072 bp 67.44 2.81 105.78
13_1_20cm_4_scaffold_259839
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1021 bp 67.97 3.93 105.78
13_1_20cm_4_scaffold_259869
Species: Kibdelosporangium sp. MJ126-NF4 (50%)
2 1021 bp 71.69 6.64 105.78
13_1_20cm_4_scaffold_266422
Species: Streptomyces rubellomurinus (50%)
2 1004 bp 63.84 5.25 105.78
13_1_20cm_4_scaffold_79927
Species: Methylobacter tundripaludum (50%)
2 1787 bp 72.97 6.88 105.76
13_1_20cm_4_scaffold_165657 3 1302 bp 55.07 3.08 105.76
13_1_20cm_4_scaffold_127737
Species: Hyalangium minutum (50%)
2 1461 bp 67.49 5.15 105.75
13_1_20cm_4_scaffold_117534 3 1515 bp 67.46 8.95 105.74
13_1_20cm_4_scaffold_232399
Species: Mycobacterium farcinogenes (66.67%)
3 1098 bp 64.39 3.20 105.74
13_1_20cm_4_scaffold_250391
Species: RLO_Betaproteobacteria_68_19 (50%)
2 1047 bp 66.38 6.71 105.73
13_1_20cm_4_scaffold_64763
Class: Alphaproteobacteria (100%)
3 1955 bp 60.56 11.30 105.73
13_1_20cm_4_scaffold_105253
Species: Rubrobacter xylanophilus (50%)
2 1589 bp 65.20 2.21 105.73
13_1_20cm_4_scaffold_263013
Species: RBG_16_RIF_CHLX_72_14_curated (50%)
2 1013 bp 69.50 4.71 105.73
13_1_20cm_4_scaffold_263018
Domain: Bacteria (66.67%)
3 1013 bp 62.98 2.48 105.73
13_1_20cm_4_scaffold_231388 3 1101 bp 63.31 5.24 105.72
13_1_20cm_4_scaffold_35006
Species: Gemmatimonas aurantiaca (75%)
4 2540 bp 60.63 5.53 105.71
13_1_20cm_4_scaffold_194893
Genus: Actinoplanes (75%)
4 1209 bp 74.69 8.72 105.71
13_1_20cm_4_scaffold_39337
Genus: Streptomyces (50%)
4 2418 bp 71.09 3.22 105.71
13_1_20cm_4_scaffold_218031
Species: Gemmatimonas aurantiaca (50%)
2 1141 bp 61.96 6.16 105.70
13_1_20cm_4_scaffold_199588
Species: RLO_PLX_64_10 (50%)
2 1195 bp 65.77 5.46 105.69
13_1_20cm_4_scaffold_107016
Genus: Sphingomonas (60%)
5 2901 bp 65.22 7.53 105.69
13_1_20cm_4_scaffold_211343 3 1161 bp 59.35 4.11 105.69
13_1_20cm_4_scaffold_215708
Species: RBG_16_Acidobacteria_68_9_curated (50%)
4 1147 bp 71.05 10.50 105.67
13_1_20cm_4_scaffold_169402
Species: Candidatus Koribacter versatilis (50%)
2 1289 bp 66.95 2.53 105.66
13_1_20cm_4_scaffold_150223
Domain: Bacteria (66.67%)
3 1360 bp 68.24 3.51 105.66
13_1_20cm_4_scaffold_258344 2 1025 bp 58.24 3.92 105.66
13_1_20cm_4_scaffold_137313
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1414 bp 67.04 7.63 105.66
13_1_20cm_4_scaffold_159573
Species: BJP_IG2157_Anaerolineales_55_23 (50%)
2 1326 bp 53.39 3.41 105.66
13_1_20cm_4_scaffold_250922 2 1045 bp 71.67 7.69 105.65
13_1_20cm_4_scaffold_257268
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 1028 bp 62.16 3.91 105.64
13_1_20cm_4_scaffold_85305 4 1738 bp 64.61 6.64 105.64
13_1_20cm_4_scaffold_256080
Class: Betaproteobacteria (66.67%)
3 1031 bp 62.46 5.36 105.63
13_1_20cm_4_scaffold_171760
Species: mine drainage metagenome (50%)
2 1281 bp 54.33 5.68 105.62
Displaying items 451-500 of 256357 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.