ggKbase home page
Advanced Search
Search Help

13_1_40CM_Deltaproteobacteria_57_7

13_1_40CM_1_Deltaproteobacteria_57_7
In projects: 13_1_40CM_1  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_UNK

Properties

Avg. coverage: 6.84 Longest contig: 18.08 Kbp Bin length: 11.58 Mbp GC content: 56.68 %
Contigs count: 6398 Features count: 14500 rRNAs count: 1 tRNAs count: 54

Genome completeness

megabin RP 49 / 55 MC: 37 BSCG 48 / 51 MC: 38 ASCG 14 / 38 MC: 10

Description

Low abundance Deltas about 3 partial genomes

Displaying items 6251-6300 of 6398 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_scaffold_92987
Species: RBG_13_Deltaproteobacteria_53_10_curated (50%)
2 1718 bp 56.05 4.53 100.58
13_1_40cm_scaffold_147416
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (100%)
2 1348 bp 53.19 11.92 100.59
13_1_40cm_scaffold_118847
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1515 bp 62.38 12.09 100.59
13_1_40cm_scaffold_286271
Genus: Candidatus Entotheonella (66.67%)
3 1529 bp 61.35 7.55 100.65
13_1_40cm_scaffold_171473
Genus: Candidatus Entotheonella (66.67%)
3 1821 bp 59.80 6.06 100.66
13_1_40cm_scaffold_204179
Species: Candidatus Entotheonella sp. TSY2 (100%)
2 1356 bp 59.66 3.52 100.66
13_1_40cm_scaffold_120481
Species: Candidatus Entotheonella sp. TSY1 (66.67%)
3 2542 bp 61.09 4.74 100.67
13_1_40cm_scaffold_250975
Species: R_Deltaproteobacteria_42_39 (50%)
2 1481 bp 56.11 4.58 100.68
13_1_40cm_scaffold_153540
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 1317 bp 61.28 4.38 100.68
13_1_40cm_scaffold_31618
Species: Pelobacter carbinolicus (100%)
2 3644 bp 54.50 8.13 100.69
13_1_40cm_scaffold_195285
Species: RBG_19FT_COMBO_Euryarchaeota_69_17_curated (50%)
2 1135 bp 62.38 7.30 100.71
13_1_40cm_scaffold_97505
Species: Candidatus Entotheonella sp. TSY2 (66.67%)
3 1677 bp 57.19 3.44 100.72
13_1_40cm_scaffold_117844
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 1522 bp 57.69 7.92 100.72
13_1_40cm_scaffold_204910
Species: Bdellovibrio bacteriovorus (50%)
2 1096 bp 58.85 7.79 100.73
13_1_40cm_scaffold_22549
Phylum: Acidobacteria (50%)
4 4086 bp 54.63 9.64 100.73
13_1_40cm_scaffold_121845
Genus: Candidatus Entotheonella (66.67%)
3 1495 bp 61.61 5.04 100.74
13_1_40cm_scaffold_124676
Species: R_Gammaproteobacteria_56_15 (50%)
2 1477 bp 59.04 5.61 100.74
13_1_40cm_scaffold_113928
Species: RIFOXYC2_FULL_OD1_Magasanikbacteria_42_28_curated (50%)
2 1548 bp 61.56 3.89 100.77
13_1_40cm_scaffold_193268
Species: CG_Elusi_04 (50%)
2 1143 bp 56.61 3.07 100.79
13_1_40cm_scaffold_46653
Species: Candidatus Entotheonella sp. TSY1 (75%)
4 2408 bp 51.20 5.21 100.79
13_1_40cm_scaffold_226941
Species: Candidatus Entotheonella sp. TSY2 (50%)
2 1012 bp 58.60 4.46 100.79
13_1_40cm_scaffold_230525
Species: Anaeromyxobacter sp. Fw109-5 (100%)
2 1000 bp 57.50 7.53 100.80
13_1_40cm_scaffold_144512
Species: RBG_16_KB1_OP1_55_9_curated (50%)
2 1363 bp 52.60 11.23 100.81
13_1_40cm_scaffold_45760
Domain: Bacteria (100%)
3 2937 bp 57.64 9.14 100.82
13_1_40cm_scaffold_73500
Class: Deltaproteobacteria (50%)
6 2499 bp 60.30 12.56 100.84
13_1_40cm_scaffold_43156
Class: Deltaproteobacteria (50%)
4 2496 bp 57.61 9.65 100.84
13_1_40cm_scaffold_99093
Species: delta proteobacterium NaphS2 (50%)
2 1663 bp 56.10 5.13 100.84
13_1_40cm_scaffold_48416
Species: Sorangium cellulosum (50%)
2 2365 bp 54.21 4.67 100.85
13_1_40cm_scaffold_139049
Species: Bdellovibrio bacteriovorus (50%)
2 1392 bp 62.64 8.84 100.86
13_1_40cm_scaffold_104699
Species: R_Nitrospirae_66_17 (50%)
4 1618 bp 54.76 6.52 100.87
13_1_40cm_scaffold_223020
Species: GWD2_Deltaproteobacteria_55_8_curated (50%)
2 1026 bp 56.24 2.94 100.88
13_1_40cm_scaffold_176442
Species: Desulfomonile tiedjei (50%)
2 1213 bp 62.49 6.41 100.91
13_1_40cm_scaffold_92993
Species: Cystobacter violaceus (50%)
2 1718 bp 58.73 6.28 100.93
13_1_40cm_scaffold_159721
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1287 bp 59.21 4.88 100.93
13_1_40cm_scaffold_36850
Domain: Bacteria (100%)
3 3644 bp 55.90 4.00 100.93
13_1_40cm_scaffold_145621
Species: Anaeromyxobacter sp. Fw109-5 (66.67%)
3 2006 bp 56.98 4.50 100.95
13_1_40cm_scaffold_22709
Species: Anaeromyxobacter sp. Fw109-5 (50%)
2 3358 bp 57.21 4.56 100.95
13_1_40cm_scaffold_145963
Species: Desulfococcus multivorans (50%)
2 1355 bp 50.04 2.78 100.96
13_1_40cm_scaffold_194530
Species: R_Betaproteobacteria_65_24 (50%)
2 1138 bp 55.71 5.07 100.97
13_1_40cm_scaffold_220953
Species: Desulfomonile tiedjei (50%)
2 1034 bp 57.83 3.88 100.97
13_1_40cm_scaffold_44377
Class: Deltaproteobacteria (75%)
4 4272 bp 54.56 6.35 100.98
13_1_40cm_scaffold_4072
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_54_10_curated (50%)
8 6972 bp 57.53 6.19 100.99
13_1_40cm_scaffold_135659
Species: RLO_Deltaproteobacteria_60_16 (66.67%)
3 1411 bp 78.88 6.58 100.99
13_1_40cm_scaffold_204157
Species: Candidatus Babela massiliensis (50%)
2 1099 bp 44.22 2.28 101.00
13_1_40cm_scaffold_138225
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated (50%)
2 1396 bp 60.74 8.27 101.00
13_1_40cm_scaffold_308029
Species: Candidatus Entotheonella sp. TSY1 (50%)
2 1387 bp 62.65 6.51 101.01
13_1_40cm_scaffold_285606
Species: RBG_16_Planctomycetes_41_13_curated (50%)
2 1425 bp 58.95 15.50 101.05
13_1_40cm_scaffold_418195
Species: RLO_Deltaproteobacteria_60_16 (50%)
2 1140 bp 56.23 5.28 101.05
13_1_40cm_scaffold_345691
Species: Candidatus Entotheonella sp. TSY1 (100%)
2 1219 bp 58.90 5.97 101.15
13_1_40cm_scaffold_91863
Species: CG_Desulfob_01 (50%)
2 1729 bp 55.47 6.97 101.16
Displaying items 6251-6300 of 6398 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.