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13_1_40cm_2_UNK

In projects: 13_1_40CM_2  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.10 Longest contig: 114.33 Kbp Bin length: 743.12 Mbp GC content: 62.33 %
Contigs count: 354474 Features count: 988742 rRNAs count: 48 tRNAs count: 6335

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Displaying items 701-750 of 354474 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_188864
Class: Actinobacteria (50%)
4 1394 bp 65.49 3.12 105.95
13_1_40cm_2_scaffold_422760
Order: Rhizobiales (66.67%)
3 1328 bp 62.73 7.34 105.95
13_1_40cm_2_scaffold_93385
Phylum: Gemmatimonadetes (60%)
5 2778 bp 66.34 3.78 105.94
13_1_40cm_2_scaffold_427748
Species: Frankia sp. QA3 (50%)
2 1484 bp 70.82 2.93 105.93
13_1_40cm_2_scaffold_236044
Species: Ktedonobacter racemifer (100%)
3 1249 bp 55.80 2.04 105.93
13_1_40cm_2_scaffold_147358 4 1572 bp 53.18 3.63 105.92
13_1_40cm_2_scaffold_135335
Species: RLO_Betaproteobacteria_65_14 (100%)
3 1640 bp 67.93 2.38 105.92
13_1_40cm_2_scaffold_261835
Domain: Bacteria (66.67%)
3 1184 bp 55.83 4.05 105.91
13_1_40cm_2_scaffold_247866
Species: Rhodopirellula maiorica (50%)
2 1218 bp 61.41 2.59 105.91
13_1_40cm_2_scaffold_379402
Species: mine drainage metagenome (50%)
2 1320 bp 67.58 5.11 105.91
13_1_40cm_2_scaffold_176772
Species: R_Acidobacteria_65_29 (50%)
2 1439 bp 57.75 1.67 105.91
13_1_40cm_2_scaffold_682538
Species: Pseudonocardia dioxanivorans (50%)
2 1017 bp 66.27 7.08 105.90
13_1_40cm_2_scaffold_586138
Species: Candidatus Solibacter usitatus (100%)
3 1170 bp 64.27 1.79 105.90
13_1_40cm_2_scaffold_95355 6 1951 bp 54.79 3.54 105.89
13_1_40cm_2_scaffold_84968 3 2819 bp 63.46 18.41 105.89
13_1_40cm_2_scaffold_100181 5 2955 bp 66.43 2.87 105.89
13_1_40cm_2_scaffold_252224
Species: Deinococcus peraridilitoris (50%)
2 1207 bp 60.40 1.86 105.88
13_1_40cm_2_scaffold_252338
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1207 bp 54.43 1.74 105.88
13_1_40cm_2_scaffold_352500 2 1003 bp 66.10 2.09 105.88
13_1_40cm_2_scaffold_91350
Species: uncultured bacterium (50%)
2 1992 bp 68.62 3.39 105.87
13_1_40cm_2_scaffold_158695
Species: Mycobacterium neoaurum (50%)
2 1516 bp 65.90 3.96 105.87
13_1_40cm_2_scaffold_203034
Species: Bradyrhizobium sp. LTSPM299 (66.67%)
3 1346 bp 57.95 3.12 105.87
13_1_40cm_2_scaffold_250894 3 1210 bp 55.04 2.36 105.87
13_1_40cm_2_scaffold_258142
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
2 1193 bp 73.26 3.02 105.87
13_1_40cm_2_scaffold_290040 3 1125 bp 48.98 1.33 105.87
13_1_40cm_2_scaffold_165600
Species: GWC2_Geobacteraceae_58_44_curated (50%)
2 1485 bp 67.68 2.63 105.86
13_1_40cm_2_scaffold_306985
Species: RBG_16_Nitrospirae_64_22_curated (50%)
4 1094 bp 52.19 1.92 105.85
13_1_40cm_2_scaffold_325423
Class: Alphaproteobacteria (50%)
4 1060 bp 64.53 4.81 105.85
13_1_40cm_2_scaffold_334135
Species: R_Rokubacteria_73_56 (100%)
2 1043 bp 68.74 6.62 105.85
13_1_40cm_2_scaffold_229327 2 1267 bp 66.93 2.25 105.84
13_1_40cm_2_scaffold_239952 2 1238 bp 57.35 10.30 105.82
13_1_40cm_2_scaffold_556248 3 1188 bp 66.08 3.03 105.81
13_1_40cm_2_scaffold_81818
Domain: Bacteria (66.67%)
3 2101 bp 69.35 3.78 105.81
13_1_40cm_2_scaffold_345867
Species: Candidatus Koribacter versatilis (50%)
2 1018 bp 56.09 1.77 105.80
13_1_40cm_2_scaffold_197652
Species: Kineococcus radiotolerans (50%)
2 1364 bp 64.44 1.76 105.79
13_1_40cm_2_scaffold_461201 3 1330 bp 52.71 6.09 105.79
13_1_40cm_2_scaffold_532272
Species: R_Acidobacteria_68_18 (50%)
2 1041 bp 65.32 2.88 105.76
13_1_40cm_2_scaffold_401646
Species: RBG_16_Thaumarchaeota_49_8_curated (50%)
2 1319 bp 59.36 11.94 105.76
13_1_40cm_2_scaffold_343337
Species: Delftia acidovorans (100%)
2 1024 bp 59.96 3.52 105.76
13_1_40cm_2_scaffold_172026 3 1458 bp 54.05 5.97 105.76
13_1_40cm_2_scaffold_241720
Species: RBG_16_Actinobacteria_67_10_curated (50%)
2 1234 bp 66.29 2.80 105.75
13_1_40cm_2_scaffold_676728
Species: R_Acidobacteria_65_29 (50%)
2 1044 bp 63.12 2.30 105.75
13_1_40cm_2_scaffold_477142
Species: R_Nitrospirae_62_14 (100%)
3 1149 bp 66.67 18.80 105.74
13_1_40cm_2_scaffold_537274 3 1271 bp 52.71 2.83 105.74
13_1_40cm_2_scaffold_189258
Class: Betaproteobacteria (50%)
4 1393 bp 64.75 3.55 105.74
13_1_40cm_2_scaffold_194216
Phylum: Proteobacteria (66.67%)
3 1376 bp 66.72 2.83 105.74
13_1_40cm_2_scaffold_209654
Species: RBG_13_Deltaproteobacteria_47_9_curated (50%)
2 1325 bp 69.06 2.49 105.74
13_1_40cm_2_scaffold_570231
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1064 bp 72.56 26.64 105.73
13_1_40cm_2_scaffold_188345
Species: RIFOXYD1_FULL_OD1_41_16_curated (50%)
2 1396 bp 55.73 1.61 105.73
13_1_40cm_2_scaffold_340581 2 1030 bp 60.58 1.46 105.73
Displaying items 701-750 of 354474 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.