ggKbase home page
Advanced Search
Search Help

13_1_40CM_2_Myxococcales_68_15

In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 14.91 Longest contig: 10.09 Kbp Bin length: 1.27 Mbp GC content: 67.89 %
Contigs count: 465 Features count: 1445 rRNAs count: 0 tRNAs count: 3

Genome completeness

partial RP 24 / 55 MC: 1 BSCG 22 / 51 ASCG 5 / 38 MC: 1
Displaying items 1-50 of 465 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
13_1_40cm_2_scaffold_399484
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1659 bp 67.75 13.74 110.13
13_1_40cm_2_scaffold_310031
Species: RBG_16_RIF_CHLX_69_14_curated (50%)
2 1088 bp 71.69 15.44 106.43
13_1_40cm_2_scaffold_528500
Phylum: Proteobacteria (66.67%)
3 1083 bp 65.93 13.16 104.16
13_1_40cm_2_scaffold_103372
Species: R_Nitrospirae_62_14 (50%)
2 2393 bp 62.60 18.22 102.05
13_1_40cm_2_scaffold_50117
Species: RBG_16_Anaeromyxobacter_69_14_curated (50%)
4 3835 bp 68.06 16.87 101.54
13_1_40cm_2_scaffold_211717
Species: Hyalangium minutum (50%)
2 1318 bp 71.24 11.95 101.52
13_1_40cm_2_scaffold_155927
Species: Anaeromyxobacter sp. PSR-1 (50%)
2 1529 bp 67.50 12.16 101.44
13_1_40cm_2_scaffold_59421
Class: Deltaproteobacteria (50%)
4 4233 bp 70.85 13.57 100.85
13_1_40cm_2_scaffold_232922
Species: RLO_Nitrospinae_45_22 (50%)
2 1257 bp 66.91 13.96 100.72
13_1_40cm_2_scaffold_390795
Species: R_Gemmatimonadetes_71_11 (50%)
2 1637 bp 70.19 15.27 100.61
13_1_40cm_2_scaffold_186063
Species: RBG_13_Deltaproteobacteria_61_14_curated (50%)
2 1405 bp 71.46 14.63 100.57
13_1_40cm_2_scaffold_312637
Species: CG_Gallio_01 (50%)
2 1083 bp 64.64 12.60 100.55
13_1_40cm_2_scaffold_466981
Species: CG_Gallio_01 (50%)
2 1268 bp 64.12 15.35 100.55
13_1_40cm_2_scaffold_231827
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1260 bp 72.70 18.69 100.48
13_1_40cm_2_scaffold_96866
Class: Deltaproteobacteria (66.67%)
3 1935 bp 76.12 13.33 100.47
13_1_40cm_2_scaffold_118979
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 2707 bp 69.12 16.07 100.41
13_1_40cm_2_scaffold_87910
Order: Myxococcales (60%)
5 3547 bp 66.96 14.69 100.40
13_1_40cm_2_scaffold_213983
Order: Myxococcales (66.67%)
3 1312 bp 68.45 17.38 100.38
13_1_40cm_2_scaffold_318703
Species: Anaeromyxobacter sp. Fw109-5 (50%)
2 2553 bp 65.84 12.66 100.35
13_1_40cm_2_scaffold_349260
Species: Anaeromyxobacter sp. K (50%)
2 1011 bp 71.22 13.20 100.30
13_1_40cm_2_scaffold_177624
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1436 bp 69.36 18.18 100.28
13_1_40cm_2_scaffold_311218
Species: Sorangium cellulosum (50%)
2 1086 bp 68.78 16.30 100.28
13_1_40cm_2_scaffold_292022
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1122 bp 72.91 16.84 100.27
13_1_40cm_2_scaffold_544052
Species: Stigmatella aurantiaca (50%)
2 1125 bp 62.76 13.87 100.27
13_1_40cm_2_scaffold_101235
Genus: Anaeromyxobacter (66.67%)
3 1894 bp 68.59 16.00 100.26
13_1_40cm_2_scaffold_10591
Genus: Cystobacter (80%)
5 5129 bp 68.88 15.97 100.25
13_1_40cm_2_scaffold_362656
Species: Arthrobacter sp. FB24 (50%)
2 1622 bp 63.01 14.68 100.25
13_1_40cm_2_scaffold_226323
Species: Haliangium ochraceum (50%)
2 1275 bp 73.57 18.35 100.24
13_1_40cm_2_scaffold_357483
Phylum: Proteobacteria (66.67%)
3 1754 bp 71.32 11.46 100.23
13_1_40cm_2_scaffold_276203
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1153 bp 72.25 17.43 100.17
13_1_40cm_2_scaffold_238226
Species: Sorangium cellulosum (50%)
2 1243 bp 74.18 12.43 100.16
13_1_40cm_2_scaffold_226117
Species: R_Acidobacteria_61_28 (100%)
2 1276 bp 59.01 13.28 100.16
13_1_40cm_2_scaffold_199884
Species: Sorangium cellulosum (50%)
2 1357 bp 70.38 11.61 100.15
13_1_40cm_2_scaffold_194514
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1375 bp 70.98 18.00 100.15
13_1_40cm_2_scaffold_189195
Species: RBG_13_Deltaproteobacteria_58_19_curated (50%)
2 1393 bp 72.15 13.68 100.14
13_1_40cm_2_scaffold_9150
Genus: Anaeromyxobacter (66.67%)
3 5432 bp 69.72 15.63 100.13
13_1_40cm_2_scaffold_150588
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1555 bp 71.77 13.70 100.13
13_1_40cm_2_scaffold_13199
Order: Myxococcales (50%)
6 4686 bp 68.50 14.47 100.13
13_1_40cm_2_scaffold_142852
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1597 bp 69.82 14.46 100.13
13_1_40cm_2_scaffold_55187
Species: Stigmatella aurantiaca (50%)
2 2526 bp 67.89 18.17 100.12
13_1_40cm_2_scaffold_423486
Species: Anaeromyxobacter dehalogenans (66.67%)
3 2044 bp 62.92 13.90 100.10
13_1_40cm_2_scaffold_80616
Species: R_Acidobacteria_67_28 (100%)
2 2116 bp 76.94 13.68 100.10
13_1_40cm_2_scaffold_479157
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1124 bp 73.04 14.15 100.09
13_1_40cm_2_scaffold_231290
Species: R_Acidobacteria_67_28 (50%)
2 1262 bp 58.32 19.73 100.08
13_1_40cm_2_scaffold_53533
Species: Stigmatella aurantiaca (100%)
2 2560 bp 68.48 15.94 100.08
13_1_40cm_2_scaffold_386138
Species: Sandaracinus amylolyticus (50%)
2 1640 bp 65.43 13.32 100.06
13_1_40cm_2_scaffold_212621
Species: Anaeromyxobacter dehalogenans (50%)
2 1952 bp 67.73 16.11 100.05
13_1_40cm_2_scaffold_67756
Species: RLO_Betaproteobacteria_68_20 (100%)
2 2297 bp 72.53 12.02 100.04
13_1_40cm_2_scaffold_9921
Order: Myxococcales (50%)
6 5860 bp 70.55 15.69 100.03
13_1_40cm_2_scaffold_307155
Species: Anaeromyxobacter dehalogenans (50%)
2 1299 bp 74.36 19.17 100.00
Displaying items 1-50 of 465 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.