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13_1_40CM_2_Ignavibacteria_61_4

13_1_40CM_2_Bacteria_60_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 4.11 Longest contig: 13.88 Kbp Bin length: 3.85 Mbp GC content: 60.30 %
Contigs count: 2044 Features count: 4436 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 37 / 55 MC: 7 BSCG 33 / 51 MC: 4 ASCG 9 / 38 MC: 4

Description

About 1 genome but 2 GC peaks.

Displaying items 651-700 of 2044 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_281796
Species: R_Ignavibacteria_55_14 (50%)
2 1142 bp 60.33 2.10 90.11
13_1_40cm_2_scaffold_538363
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1351 bp 62.62 7.88 90.16
13_1_40cm_2_scaffold_20497
Species: RLO_PLX_64_10 (50%)
2 3906 bp 62.26 2.53 90.17
13_1_40cm_2_scaffold_12893
Domain: Bacteria (100%)
4 4731 bp 55.55 2.89 90.17
13_1_40cm_2_scaffold_16124
Species: R_Ignavibacteria_55_14 (50%)
2 4318 bp 53.61 3.33 90.18
13_1_40cm_2_scaffold_190977
Species: R_Ignavibacteria_55_14 (50%)
2 2022 bp 55.34 2.67 90.21
13_1_40cm_2_scaffold_26398
Species: Hymenobacter sp. DG25B (50%)
2 3501 bp 54.78 2.57 90.23
13_1_40cm_2_scaffold_150545
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1556 bp 62.08 5.98 90.23
13_1_40cm_2_scaffold_216919
Class: Deltaproteobacteria (66.67%)
3 1303 bp 68.46 2.30 90.25
13_1_40cm_2_scaffold_49329
Phylum: Ignavibacteriae (60%)
5 2659 bp 55.02 2.48 90.26
13_1_40cm_2_scaffold_282387
Species: RBG_16_Euryarchaeota_68_12_curated (50%)
2 1140 bp 66.32 3.03 90.26
13_1_40cm_2_scaffold_159629
Species: marine sediment metagenome (50%)
2 1512 bp 52.98 3.37 90.28
13_1_40cm_2_scaffold_320259
Species: RBG_16_Planctomycetes_55_9_curated (50%)
2 1070 bp 56.64 1.12 90.28
13_1_40cm_2_scaffold_21896
Species: GWA2_Ignavibacteria_54_16_curated (75%)
4 5353 bp 56.45 2.80 90.29
13_1_40cm_2_scaffold_11803
Species: GWA2_Ignavibacteriae_55_25_curated (60%)
5 4907 bp 53.19 2.78 90.30
13_1_40cm_2_scaffold_52709
Species: R_Ignavibacteria_55_14 (50%)
2 2578 bp 57.87 8.73 90.30
13_1_40cm_2_scaffold_95855
Species: R_Ignavibacteria_55_14 (50%)
2 1946 bp 53.75 2.08 90.34
13_1_40cm_2_scaffold_165909
Species: R_Acidobacteria_67_28 (50%)
2 1484 bp 61.05 8.09 90.36
13_1_40cm_2_scaffold_183639
Species: GWA2_Ignavibacteria_54_16_curated (66.67%)
3 1972 bp 56.29 3.42 90.37
13_1_40cm_2_scaffold_131694
Phylum: Ignavibacteriae (66.67%)
3 1663 bp 52.01 2.25 90.38
13_1_40cm_2_scaffold_38299
Species: GWA2_Ignavibacteriae_55_25_curated (50%)
8 7455 bp 53.82 3.00 90.38
13_1_40cm_2_scaffold_243902
Species: GWA2_Ignavibacteriae_55_25_curated (50%)
2 1228 bp 54.64 1.71 90.39
13_1_40cm_2_scaffold_28990
Species: RBG_16_KB1_OP1_55_9_curated (100%)
1 3365 bp 53.02 3.30 90.40
13_1_40cm_2_scaffold_206618
Species: R_Elusimicrobia_61_10 (50%)
2 1334 bp 64.99 2.25 90.40
13_1_40cm_2_scaffold_250477
Species: R_Nitrospirae_62_14 (50%)
2 1211 bp 66.97 2.35 90.42
13_1_40cm_2_scaffold_230404
Species: R_Ignavibacteria_55_14 (50%)
4 1264 bp 56.72 2.49 90.43
13_1_40cm_2_scaffold_151282
Species: R_Acidobacteria_61_28 (50%)
2 1552 bp 55.67 2.42 90.46
13_1_40cm_2_scaffold_239109
Species: Ignavibacterium album (50%)
2 1240 bp 58.79 5.44 90.48
13_1_40cm_2_scaffold_317652
Species: BJP_IG2102_Ignavibacteriales_35_8 (50%)
2 1074 bp 45.34 1.82 90.50
13_1_40cm_2_scaffold_259371
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1190 bp 53.36 2.52 90.50
13_1_40cm_2_scaffold_296429
Species: marine sediment metagenome (50%)
2 1113 bp 67.65 3.23 90.57
13_1_40cm_2_scaffold_11881
Species: R_Ignavibacteria_55_14 (62.5%)
8 9049 bp 56.91 3.13 90.57
13_1_40cm_2_scaffold_74675
Species: R_Ignavibacteria_55_14 (50%)
2 2194 bp 56.15 3.42 90.66
13_1_40cm_2_scaffold_273646
Species: R_Gemmatimonadetes_71_11 (50%)
2 1158 bp 72.37 10.49 90.67
13_1_40cm_2_scaffold_54442
Species: GWA2_Ignavibacteria_54_16_curated (50%)
6 4898 bp 55.31 3.03 90.71
13_1_40cm_2_scaffold_193317
Species: RLO_Nitrospinae_39_16 (50%)
2 1379 bp 57.94 2.07 90.72
13_1_40cm_2_scaffold_342763
Species: GWA2_Ignavibacteria_54_16_curated (50%)
2 1025 bp 53.85 2.78 90.73
13_1_40cm_2_scaffold_240611
Species: CG_Arma_02 (50%)
2 1236 bp 58.41 2.91 90.78
13_1_40cm_2_scaffold_287886
Species: RBG_13_Deltaproteobacteria_65_10_curated (100%)
1 1130 bp 72.74 1.73 90.80
13_1_40cm_2_scaffold_331692
Species: RBG_16_Actinobacteria_67_10_curated (50%)
2 1612 bp 68.24 6.99 90.82
13_1_40cm_2_scaffold_428556
Species: RLO_RIF05_58_11 (100%)
2 1308 bp 62.92 3.44 90.83
13_1_40cm_2_scaffold_207558
Species: R_Ignavibacteria_55_14 (100%)
1 1331 bp 70.40 4.28 90.83
13_1_40cm_2_scaffold_197105
Species: RLO_Deltaproteobacteria_57_22 (100%)
2 2107 bp 60.75 2.32 90.84
13_1_40cm_2_scaffold_62119
Phylum: Ignavibacteriae (66.67%)
3 3758 bp 55.96 2.67 90.85
13_1_40cm_2_scaffold_202629
Species: R_Ignavibacteria_55_14 (50%)
2 1347 bp 58.72 2.00 90.87
13_1_40cm_2_scaffold_174992
Species: R_Ignavibacteria_55_14 (50%)
2 1446 bp 67.98 15.77 90.87
13_1_40cm_2_scaffold_7769
Species: R_Ignavibacteria_55_14 (71.43%)
7 8624 bp 55.81 2.49 90.93
13_1_40cm_2_scaffold_283619
Species: GWA2_Ignavibacteriae_55_25_curated (50%)
2 1138 bp 55.27 2.11 90.95
13_1_40cm_2_scaffold_277263
Species: CG_Arma_02 (100%)
1 1151 bp 56.30 2.61 90.96
13_1_40cm_2_scaffold_110303
Species: R_Acidobacteria_61_28 (50%)
2 1817 bp 61.25 1.57 90.97
Displaying items 651-700 of 2044 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.