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13_1_40CM_2_Ignavibacteria_61_4

13_1_40CM_2_Bacteria_60_4
In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 4.11 Longest contig: 13.88 Kbp Bin length: 3.85 Mbp GC content: 60.30 %
Contigs count: 2044 Features count: 4436 rRNAs count: 0 tRNAs count: 16

Genome completeness

partial RP 37 / 55 MC: 7 BSCG 33 / 51 MC: 4 ASCG 9 / 38 MC: 4

Description

About 1 genome but 2 GC peaks.

Displaying items 101-150 of 2044 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_275422
Species: RBG_16_Acidobacteria_70_10_curated (50%)
2 1155 bp 68.23 1.17 100.26
13_1_40cm_2_scaffold_356616
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1547 bp 69.10 3.59 100.26
13_1_40cm_2_scaffold_268248
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1170 bp 71.20 2.18 100.26
13_1_40cm_2_scaffold_61707
Phylum: Gemmatimonadetes (66.67%)
3 2397 bp 68.59 8.57 100.25
13_1_40cm_2_scaffold_251265
Domain: Bacteria (100%)
3 1209 bp 64.93 8.68 100.25
13_1_40cm_2_scaffold_246549
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1221 bp 71.42 1.97 100.25
13_1_40cm_2_scaffold_236307
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1248 bp 74.36 6.25 100.24
13_1_40cm_2_scaffold_217246
Species: R_Gemmatimonadetes_71_11 (50%)
2 1302 bp 67.82 2.30 100.23
13_1_40cm_2_scaffold_118801
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
2 1751 bp 69.56 3.08 100.23
13_1_40cm_2_scaffold_202593
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1347 bp 64.51 3.23 100.22
13_1_40cm_2_scaffold_178951
Species: R_Ignavibacteria_55_14 (100%)
2 1431 bp 56.53 3.14 100.21
13_1_40cm_2_scaffold_177211
Species: R_Gemmatimonadetes_71_11 (50%)
2 1437 bp 76.20 2.71 100.21
13_1_40cm_2_scaffold_98015
Species: uncultured bacterium Lac161 (50%)
2 1925 bp 61.04 3.35 100.21
13_1_40cm_2_scaffold_170590
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 1464 bp 64.34 1.64 100.21
13_1_40cm_2_scaffold_170012
Species: RBG_16_Nitrospirae_64_22_curated (50%)
2 1467 bp 68.92 2.86 100.21
13_1_40cm_2_scaffold_91753
Domain: Bacteria (80%)
5 1988 bp 66.40 2.26 100.20
13_1_40cm_2_scaffold_91153
Species: GWA2_Ignavibacteriae_55_25_curated (100%)
2 1994 bp 59.63 2.93 100.20
13_1_40cm_2_scaffold_88034
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
2 2027 bp 68.92 9.47 100.20
13_1_40cm_2_scaffold_384173
Species: R_Ignavibacteria_55_14 (50%)
2 1557 bp 58.45 6.02 100.19
13_1_40cm_2_scaffold_149001
Species: Ignavibacterium album (50%)
2 1563 bp 55.92 6.81 100.19
13_1_40cm_2_scaffold_50151
Species: RBG_16_Zixibacteria_53_22_curated (66.67%)
3 2638 bp 66.15 11.03 100.19
13_1_40cm_2_scaffold_145095
Species: R_Ignavibacteria_55_14 (50%)
2 1584 bp 57.89 3.60 100.19
13_1_40cm_2_scaffold_309096
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1090 bp 63.39 8.53 100.18
13_1_40cm_2_scaffold_129974
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1674 bp 66.85 3.23 100.18
13_1_40cm_2_scaffold_293128
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (100%)
2 1120 bp 67.59 3.08 100.18
13_1_40cm_2_scaffold_286751
Species: RBG_16_RIF_WS3X_71_46_curated (50%)
2 1132 bp 59.01 1.00 100.18
13_1_40cm_2_scaffold_285059
Species: R_Ignavibacteria_55_14 (50%)
2 1135 bp 71.19 1.32 100.18
13_1_40cm_2_scaffold_279214
Species: Chlorobium sp. GBChlB (50%)
2 1147 bp 62.07 2.35 100.17
13_1_40cm_2_scaffold_276292
Species: RBG_16_Zixibacteria_48_11_curated (50%)
2 1153 bp 56.63 2.47 100.17
13_1_40cm_2_scaffold_120730
Species: R_Gemmatimonadetes_71_11 (50%)
2 1737 bp 74.90 5.27 100.17
13_1_40cm_2_scaffold_263669
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1180 bp 69.49 4.58 100.17
13_1_40cm_2_scaffold_132855
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 2411 bp 72.04 9.22 100.17
13_1_40cm_2_scaffold_252217
Species: GWA2_Ignavibacteria_54_16_curated (100%)
2 1207 bp 57.91 2.11 100.17
13_1_40cm_2_scaffold_249907
Species: R_Ignavibacteria_55_14 (50%)
2 1213 bp 60.68 1.61 100.16
13_1_40cm_2_scaffold_190452
Species: R_Gemmatimonadetes_71_11 (50%)
2 1830 bp 72.40 24.18 100.16
13_1_40cm_2_scaffold_237181
Species: RBG_16_RIF_WS3X_71_46_curated (100%)
2 1246 bp 67.74 2.29 100.16
13_1_40cm_2_scaffold_101718
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (100%)
2 1890 bp 57.25 3.17 100.16
13_1_40cm_2_scaffold_132851
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 2522 bp 73.20 6.42 100.16
13_1_40cm_2_scaffold_190152
Domain: Bacteria (50%)
4 1908 bp 71.59 10.42 100.16
13_1_40cm_2_scaffold_215966
Species: R_Gemmatimonadetes_71_11 (50%)
2 1306 bp 64.17 2.07 100.15
13_1_40cm_2_scaffold_93095
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1974 bp 64.59 15.96 100.15
13_1_40cm_2_scaffold_154908
Species: R_Acidobacteria_67_28 (50%)
2 1974 bp 64.54 4.73 100.15
13_1_40cm_2_scaffold_145708
Species: RIFOXYC2_FULL_Ignavibacteria_38_25_curated (50%)
2 2004 bp 65.97 8.98 100.15
13_1_40cm_2_scaffold_427604
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1342 bp 67.44 9.50 100.15
13_1_40cm_2_scaffold_83639
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
2 2079 bp 65.61 2.81 100.14
13_1_40cm_2_scaffold_186106
Species: R_Ignavibacteria_55_14 (50%)
2 1405 bp 72.31 2.14 100.14
13_1_40cm_2_scaffold_185227
Species: R_Deltaproteobacteria_43_9 (50%)
2 1408 bp 63.35 1.49 100.14
13_1_40cm_2_scaffold_182549
Species: R_Ignavibacteria_55_14 (50%)
2 1417 bp 67.04 2.54 100.14
13_1_40cm_2_scaffold_77613
Species: R_Ignavibacteria_55_14 (100%)
2 2154 bp 60.26 2.72 100.14
13_1_40cm_2_scaffold_298036
Species: GWA2_Ignavibacteria_54_16_curated (50%)
2 1441 bp 57.81 2.60 100.14
Displaying items 101-150 of 2044 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.