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13_1_40cm_2_scaffold_25_22

Organism: 13_1_40CM_2_Actinobacteria_65_8

partial RP 18 / 55 MC: 2 BSCG 21 / 51 MC: 1 ASCG 6 / 38
Location: 21787..22434

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma24 factor n=1 Tax=Frankia sp. BMG5.12 RepID=UPI0003704004 similarity UNIREF
DB: UNIREF100
  • Identity: 55.5
  • Coverage: 209.0
  • Bit_score: 223
  • Evalue 2.00e-55
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 54.1
  • Coverage: 205.0
  • Bit_score: 223
  • Evalue 2.10e-55
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 53.6
  • Coverage: 211.0
  • Bit_score: 215
  • Evalue 1.50e-53

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Taxonomy

RBG_19FT_COMBO_Actinobacteria_70_19_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 648
ATGGACGCAACCACAGCCGTCCCGCCCACGGACGAGTTGGAGCTCGTGCTCGCGCTGCGCGGGGGCGATGAAGCCGCCTTCACGATGCTCGTCAGGCGCTACCAGGCCGCGATGCTCCAGGTCGCTCTGACCTACGTGCCCAGTCGTGCGATCGCCGAGGAAATCGTGCAGGAAGCCTGGCTGGGCGTGCTTCAAGGCATAGGACGCTTCGAAAGACGTTCGCAACTGAAGACATGGATCATGCGCATCGTCATTAACCGCGCCAAGCGGCGAGGTAGTGAAGAAGCACGAACCATCCCGTTCTCAGTGATGCAGCCTGCGCGGGATGACTTCAGCCCGTTGGTGGACCCGGATCGGTTCCGGGGCCCCTCAGATCCATGGCCCGGTCACTGGTGGTCGCCCCCAGCGAGTTGGTCTCAGATACCGGAGGACCGGCTGCTGTCGAGAGAGATGTTCGAGCACATGCGCCACGCCCTGGACCATCTGCCGGAAAGGCAACGCGAGGTGATCACCCTCCGTGATGTGCTCGGATATTCGGGAGCGGAGGTGTGTAACGTGCTGGCGATTTCCGAGACGAATCAGCGAGTTCTACTGCACCGTGCTCGTTCCCGAGTGCGTGCTGCTGTGGAGCGCTACCTACAGCAATGA
PROTEIN sequence
Length: 216
MDATTAVPPTDELELVLALRGGDEAAFTMLVRRYQAAMLQVALTYVPSRAIAEEIVQEAWLGVLQGIGRFERRSQLKTWIMRIVINRAKRRGSEEARTIPFSVMQPARDDFSPLVDPDRFRGPSDPWPGHWWSPPASWSQIPEDRLLSREMFEHMRHALDHLPERQREVITLRDVLGYSGAEVCNVLAISETNQRVLLHRARSRVRAAVERYLQQ*