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13_1_40cm_2_scaffold_5227_13

Organism: 13_1_40CM_2_Actinobacteria_66_13

partial RP 12 / 55 BSCG 13 / 51 ASCG 9 / 38
Location: comp(9801..11273)

Top 3 Functional Annotations

Value Algorithm Source
UPI0003D60D7F related cluster n=1 Tax=unknown RepID=UPI0003D60D7F similarity UNIREF
DB: UNIREF100
  • Identity: 47.3
  • Coverage: 528.0
  • Bit_score: 411
  • Evalue 9.00e-112
  • rbh
sigma 38; K03086 RNA polymerase primary sigma factor Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 54.7
  • Coverage: 459.0
  • Bit_score: 450
  • Evalue 3.20e-123
RNA polymerase sigma-70 subunit RpoD similarity KEGG
DB: KEGG
  • Identity: 50.6
  • Coverage: 468.0
  • Bit_score: 403
  • Evalue 1.20e-109

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Taxonomy

RBG_19FT_COMBO_Actinobacteria_70_19_curated → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1473
GTGAAGCAGCCGCCCGAGGCGAAAGCGCCGGTGACGAAGCCGGTCGCGACGAAGCCAGTGAAGGCGAACAGGGTGGTCGAGAAGCCGGAGCCGAAGTTCGAAGACGAGCTGATGGCCGTCGCCGAGCAGCTGATCATAAAGGGCAAAGAGCAGGGATACCTCACCCCCGACGACATCCTGCAGGGCTTCCCCGAGATCGACGCCGAGCCCGACCAGATCTTCCGTATCTTCGCCGCGTTCAAGGAGATCGGGATCGAGGTCACCGACGGCGAGAAGGACTTCGAAGAGGTCGAGCAGATCGACGACGAGATGCTGCTCGACATCGAGATGATGGACTCCGTCTCGCTCGACGACCCGGTGCGCATGTACCTGAAGGAGATCGGGCGAGTTTCTCTTCTGACGGCCAACGACGAGGTCGAGCTGGCGCAGGCGATCGAGGCCAAGCCCCTGCACGACGCGATGAAGGCGCTGAACGTGATCGAGGAGGTCGACGGGCGGCAGCGCTCGGTCGACGAGCTGCTGCCCGAGGTCATCGAGCGATTGGCCACGGTCAAGCGGAAGGGGCAGCAGTCGCACATCGCGCAGGAGCTGCTCGGCTTGATCGATCTCGGCAAGCTGCCCAATCTCACCGACGCGGCGGCCGCGGAGCGCCGGCGGATCGCGAACGGAGCCCGTCCGCGGGTGCGGGCCGAGGCTTTGGAGTCGTACCGCATCGCGCGCTATCGGCTGACCGAGCGCTACGAGCGCGCCTACGAGGCGAAGCAGCGGCTGACGGAGGCCAACCTGCGGTTGGTGGTTTCGATCGCCAAGAAGTACATCGGGCGTGGGATGTCGTTCCTGGATTTGATCCAGGAAGGGAACATGGGCCTGATCCGCGCGGTCGAGAAGTTCGACTACCACAAGGGCTACAAGTTCTCGACTTACGCCACGTGGTGGATCCGGCAGGCCATCACGCGAGCCATCGCCGACCAGGCCCGGACGATCCGCATCCCGGTGCACATGGTCGAGACGATCAACAAGCTGGTGCGCGTGTCGCGGCGGCTCTTGCAGGAGCTCGGGCGCGAGCCGTCCGACGACGAGATCGGCGAGGAGATGGGGATCACGCCGGAGAAGGTTCGCGAGATCGTGAAGGTTTCGCAGGACCCCGTGTCTTTGGAGACGCCGATCGGCGAGGAAGAGGATTCGCACCTCGGCGACTTCGTAGAGGACCGGGAGGCGGTCTCGCCGTCGGACGCGGCTTCTTTGACGATGCTGCACTCCGAGGTGGAGGATGTTCTCGACACTTTGACTCCGCGGGAGCGGCGCGTGCTGCAGCTGCGGTTCGGGCTGATCGATGGCCACCAGCGGACCCTGGAAGAGGTGGGCAAGCGGTTCGGGGTGACCCGGGAGCGGATCCGCCAGATCGAGGCCAAGGCGCTGCGCAAGCTGCGCCACCCGTCGCGGTCGAAGAAGCTGCGGGACTACCTCGAGTAG
PROTEIN sequence
Length: 491
VKQPPEAKAPVTKPVATKPVKANRVVEKPEPKFEDELMAVAEQLIIKGKEQGYLTPDDILQGFPEIDAEPDQIFRIFAAFKEIGIEVTDGEKDFEEVEQIDDEMLLDIEMMDSVSLDDPVRMYLKEIGRVSLLTANDEVELAQAIEAKPLHDAMKALNVIEEVDGRQRSVDELLPEVIERLATVKRKGQQSHIAQELLGLIDLGKLPNLTDAAAAERRRIANGARPRVRAEALESYRIARYRLTERYERAYEAKQRLTEANLRLVVSIAKKYIGRGMSFLDLIQEGNMGLIRAVEKFDYHKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRVSRRLLQELGREPSDDEIGEEMGITPEKVREIVKVSQDPVSLETPIGEEEDSHLGDFVEDREAVSPSDAASLTMLHSEVEDVLDTLTPRERRVLQLRFGLIDGHQRTLEEVGKRFGVTRERIRQIEAKALRKLRHPSRSKKLRDYLE*