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13_1_40CM_2_Archaea_39_4

13_1_40CM_2_Thaumarchaeota_38_5

In projects: 13_1_40CM_2 | angelo_ncbi_2016 | archaea_ggkbase | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Thaumarchaeota → TACK → Archaea

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 5.39 Longest contig: 40.96 Kbp Bin length: 901.55 Kbp GC content: 38.28 %

Contigs count: 216 Features count: 1108 rRNAs count: 0 tRNAs count: 14

Genome completeness

partial RP 7 / 55 MC: 1 BSCG 3 / 51 ASCG 18 / 38 MC: 1

Displaying items 201-216 of 216 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_26720	5	3482 bp	38.23	1.55	39.89
13_1_40cm_2_scaffold_253054 Species: uncultured archaeon (50%)	2	1205 bp	39.09	1.49	88.13
13_1_40cm_2_scaffold_181495 Species: uncultured archaeon (50%)	2	1421 bp	33.85	1.48	75.79
13_1_40cm_2_scaffold_349067 Species: CSP1_1_Thaumarchaeota (100%)	1	1011 bp	40.55	1.48	86.05
13_1_40cm_2_scaffold_246379 Species: uncultured archaeon (50%)	2	1221 bp	37.76	1.47	66.34
13_1_40cm_2_scaffold_135866 Species: uncultured archaeon (50%)	2	1638 bp	39.38	1.47	45.42
13_1_40cm_2_scaffold_229297 Species: RBG_16_Bathyarchaeota_57_9_curated (50%)	2	1267 bp	39.94	1.42	91.16
13_1_40cm_2_scaffold_267079 Species: uncultured crenarchaeote (50%)	2	1173 bp	35.29	1.41	80.82
13_1_40cm_2_scaffold_209845 Species: CSP1_1_Thaumarchaeota (50%)	2	1324 bp	36.03	1.36	88.60
13_1_40cm_2_scaffold_295237 Species: uncultured archaeon (50%)	2	1116 bp	37.01	1.34	93.55
13_1_40cm_2_scaffold_278337 Species: uncultured archaeon (50%)	2	1149 bp	42.21	1.31	98.43
13_1_40cm_2_scaffold_84279 Species: Candidatus Parvarchaeum acidophilus (100%)	1	2071 bp	42.49	1.30	99.81
13_1_40cm_2_scaffold_317955 Species: CSP1_1_Thaumarchaeota (100%)	1	1074 bp	33.24	1.12	68.72
13_1_40cm_2_scaffold_308366 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1091 bp	36.66	1.10	70.39
13_1_40cm_2_scaffold_135986 Order: Nitrosopumilales (66.67%)	3	1637 bp	33.72	1.10	90.71
13_1_40cm_2_scaffold_111330 Species: Thermofilum pendens (50%)	2	1809 bp	38.97	1.00	81.43

Displaying items 201-216 of 216 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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