ggKbase | organisms

13_1_40CM_2_Thaumarchaeota_39_7

In projects: 13_1_40CM_2 | angelo_ncbi_2016 | archaea_ggkbase | meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Thaumarchaeota → TACK → Archaea

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 6.60 Longest contig: 65.50 Kbp Bin length: 1.04 Mbp GC content: 38.64 %

Contigs count: 216 Features count: 1296 rRNAs count: 0 tRNAs count: 18

Genome completeness

partial RP 27 / 55 MC: 2 BSCG 11 / 51 ASCG 25 / 38 MC: 1

Displaying items 151-200 of 216 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_2_scaffold_329879 Species: marine sediment metagenome (50%)	2	1625 bp	42.83	5.91	93.97
13_1_40cm_2_scaffold_129496 Species: Thaumarchaeota archaeon N4 (50%)	2	1677 bp	38.88	5.46	83.54
13_1_40cm_2_scaffold_240585 Species: Candidatus Nitrosopumilus sp. AR2 (50%)	2	1237 bp	40.34	8.49	99.19
13_1_40cm_2_scaffold_181001 Species: Nitrososphaera viennensis (50%)	2	1423 bp	43.57	5.69	76.53
13_1_40cm_2_scaffold_164878 Species: Candidatus Nitrososphaera evergladensis (100%)	2	2118 bp	42.78	6.02	82.01
13_1_40cm_2_scaffold_165577 Species: Candidatus Nitrosopumilus sp. D3C (50%)	2	1485 bp	35.56	4.75	81.41
13_1_40cm_2_scaffold_103976 Species: uncultured marine thaumarchaeote KM3_83_E04 (50%)	2	1870 bp	35.61	10.35	91.76
13_1_40cm_2_scaffold_543875 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1354 bp	37.96	8.53	51.40
13_1_40cm_2_scaffold_450733 Species: Candidatus Nitrosoarchaeum limnia (50%)	2	1164 bp	40.29	9.54	100.26
13_1_40cm_2_scaffold_271539 Species: Candidatus Nitrososphaera gargensis (100%)	2	1164 bp	43.81	5.93	56.70
13_1_40cm_2_scaffold_449557 Species: Candidatus Nitrososphaera gargensis (100%)	2	1459 bp	42.49	7.79	66.00
13_1_40cm_2_scaffold_267900 Species: Nitrososphaera viennensis (50%)	2	1171 bp	36.29	7.30	89.15
13_1_40cm_2_scaffold_125848 Species: Candidatus Nitrososphaera gargensis (50%)	2	1701 bp	42.21	5.56	85.54
13_1_40cm_2_scaffold_312558 Species: Candidatus Nitrosopumilus sp. AR2 (50%)	2	1574 bp	37.23	5.19	73.00
13_1_40cm_2_scaffold_307780 Species: Candidatus Nitrososphaera gargensis (50%)	2	1537 bp	42.68	5.25	68.51
13_1_40cm_2_scaffold_79738 Species: Candidatus Nitrososphaera gargensis (50%)	2	2127 bp	42.83	4.65	67.84
13_1_40cm_2_scaffold_223667 Species: Nitrosopumilus maritimus (50%)	2	2135 bp	39.20	7.10	65.76
13_1_40cm_2_scaffold_317858 Species: Candidatus Nitrosopumilus sp. AR2 (50%)	2	1074 bp	38.36	4.89	99.44
13_1_40cm_2_scaffold_276039 Species: Candidatus Nitrosopumilus salaria (50%)	2	1576 bp	36.10	7.80	95.56
13_1_40cm_2_scaffold_262632 Species: Candidatus Nitrosopumilus koreensis (50%)	2	1182 bp	39.34	8.76	89.59
13_1_40cm_2_scaffold_260397 Species: Candidatus Nitrososphaera gargensis (50%)	2	1187 bp	39.26	4.93	68.74
13_1_40cm_2_scaffold_193248 Species: Candidatus Nitrosoarchaeum limnia (50%)	2	1379 bp	38.65	6.96	97.46
13_1_40cm_2_scaffold_90150 Species: marine sediment metagenome (50%)	2	2004 bp	37.48	4.72	92.22
13_1_40cm_2_scaffold_500538 Species: Candidatus Nitrosopumilus sp. D3C (50%)	2	1224 bp	42.08	7.35	96.08
13_1_40cm_2_scaffold_68609 Species: Thaumarchaeota archaeon N4 (50%)	2	2285 bp	37.77	7.03	68.67
13_1_40cm_2_scaffold_130572 Species: Candidatus Nitrosoarchaeum koreensis (50%)	2	1670 bp	40.42	7.01	92.87
13_1_40cm_2_scaffold_182493 Species: uncultured marine thaumarchaeote KM3_74_H09 (50%)	2	1418 bp	37.59	5.18	95.84
13_1_40cm_2_scaffold_79765 Species: Nitrososphaera viennensis (50%)	2	2740 bp	36.46	5.18	83.43
13_1_40cm_2_scaffold_147482 Species: Candidatus Nitrosopumilus sp. NF5 (50%)	2	1571 bp	40.36	7.35	97.96
13_1_40cm_2_scaffold_125444 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1704 bp	42.25	7.66	35.92
13_1_40cm_2_scaffold_136261 Species: Candidatus Nitrososphaera gargensis (50%)	2	1635 bp	42.57	7.98	28.99
13_1_40cm_2_scaffold_170130 Species: CG_Micra_01 (50%)	2	1466 bp	36.83	5.73	80.42
13_1_40cm_2_scaffold_318591 Species: Thaumarchaeota archaeon N4 (50%)	2	1073 bp	34.58	5.45	100.37
13_1_40cm_2_scaffold_210434 Species: Nitrosopumilus maritimus (50%)	2	2641 bp	39.34	10.22	20.90
13_1_40cm_2_scaffold_449989 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1204 bp	43.02	5.30	86.71
13_1_40cm_2_scaffold_111528 Species: Nitrososphaera viennensis (50%)	2	1807 bp	41.89	7.72	36.52
13_1_40cm_2_scaffold_208534 Species: Candidatus Nitrososphaera gargensis (50%)	2	1867 bp	38.94	6.38	89.34
13_1_40cm_2_scaffold_178814 Species: Candidatus Nitrosopumilus sp. AR2 (50%)	2	1431 bp	39.48	6.08	95.81
13_1_40cm_2_scaffold_405336 Species: Thaumarchaeota archaeon N4 (50%)	2	1580 bp	36.96	5.06	96.08
13_1_40cm_2_scaffold_274644 Species: Candidatus Nitrososphaera evergladensis (50%)	2	1156 bp	43.25	4.67	71.37
13_1_40cm_2_scaffold_256220 Species: Candidatus Nitrososphaera gargensis (100%)	1	1619 bp	42.74	7.71	99.88
13_1_40cm_2_scaffold_210872 Species: uncultured marine thaumarchaeote KM3_40_C06 (100%)	1	1321 bp	36.94	5.34	85.62
13_1_40cm_2_scaffold_158710 Species: Candidatus Nitrosopumilus sp. NF5 (100%)	1	1516 bp	36.81	5.84	99.74
13_1_40cm_2_scaffold_338322 Species: Candidatus Nitrosoarchaeum limnia (100%)	1	1035 bp	37.39	8.99	67.54
13_1_40cm_2_scaffold_250049 Species: Candidatus Nitrososphaera gargensis (100%)	1	1212 bp	43.73	10.27	97.28
13_1_40cm_2_scaffold_197728 Species: Candidatus Nitrososphaera gargensis (100%)	1	2255 bp	43.24	8.25	65.06
13_1_40cm_2_scaffold_264952 Species: Thaumarchaeota archaeon N4 (100%)	1	1177 bp	39.85	7.01	90.48
13_1_40cm_2_scaffold_609636 Species: Candidatus Nitrososphaera evergladensis (100%)	1	1024 bp	42.38	6.60	37.50
13_1_40cm_2_scaffold_216630 Species: uncultured marine crenarchaeote HF4000_ANIW137N13 (100%)	1	1304 bp	39.72	6.21	99.85
13_1_40cm_2_scaffold_285535 Species: Candidatus Nitrososphaera gargensis (100%)	1	1134 bp	35.71	5.69	77.25

Displaying items 151-200 of 216 in total

13_1_40CM_2_Thaumarchaeota_39_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40CM_2_Thaumarchaeota_39_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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