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13_1_40CM_2_Gemmatimonadetes_60_3

In projects: 13_1_40CM_2  |  angelo_ncbi_2016  |  gemmatimonadetes_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: 13_1_40cm_2_UNK

Properties

Avg. coverage: 2.82 Longest contig: 8.80 Kbp Bin length: 1.97 Mbp GC content: 59.98 %
Contigs count: 1121 Features count: 2468 rRNAs count: 0 tRNAs count: 9

Genome completeness

partial RP 40 / 55 MC: 4 BSCG 33 / 51 MC: 3 ASCG 8 / 38 MC: 2
Displaying items 701-750 of 1121 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_1_40cm_2_scaffold_265618
Species: Gemmatimonadetes bacterium KBS708 (66.67%)
3 1604 bp 58.10 3.46 91.08
13_1_40cm_2_scaffold_124091
Species: Gemmatimonadetes bacterium KBS708 (50%)
4 1713 bp 60.89 3.15 91.07
13_1_40cm_2_scaffold_311580
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1559 bp 57.99 3.75 91.02
13_1_40cm_2_scaffold_130881
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1668 bp 61.69 2.43 91.01
13_1_40cm_2_scaffold_20134
Class: Gemmatimonadetes (66.67%)
3 3936 bp 58.33 4.76 91.01
13_1_40cm_2_scaffold_345596
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1019 bp 59.37 2.21 90.97
13_1_40cm_2_scaffold_205632
Class: Gemmatimonadetes (50%)
4 1742 bp 60.62 3.01 90.93
13_1_40cm_2_scaffold_320846
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (50%)
2 1069 bp 61.74 1.82 90.93
13_1_40cm_2_scaffold_120422
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1739 bp 61.24 2.85 90.91
13_1_40cm_2_scaffold_173624
Species: R_Gemmatimonadetes_71_11 (50%)
2 1452 bp 58.82 3.10 90.91
13_1_40cm_2_scaffold_64286
Species: Sandaracinus amylolyticus (50%)
2 2353 bp 59.33 1.98 90.91
13_1_40cm_2_scaffold_204824
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1340 bp 59.25 4.59 90.90
13_1_40cm_2_scaffold_33825
Class: Gemmatimonadetes (50%)
4 3148 bp 57.97 2.86 90.82
13_1_40cm_2_scaffold_219479
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1295 bp 59.00 1.97 90.81
13_1_40cm_2_scaffold_310733
Species: Pyrinomonas methylaliphatogenes (50%)
2 1087 bp 59.06 1.66 90.80
13_1_40cm_2_scaffold_66690
Species: Gemmatimonas aurantiaca (50%)
2 2314 bp 58.04 3.24 90.75
13_1_40cm_2_scaffold_157509
Species: RBG_16_Gamma2_64_10_curated (50%)
2 1521 bp 61.67 3.35 90.73
13_1_40cm_2_scaffold_220289
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1293 bp 61.33 2.55 90.72
13_1_40cm_2_scaffold_261827
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1184 bp 61.99 2.03 90.71
13_1_40cm_2_scaffold_47128
Species: RLO_Gemmatimonadetes_68_9 (50%)
4 4475 bp 62.30 3.49 90.70
13_1_40cm_2_scaffold_185673
Species: Gemmatimonas aurantiaca (50%)
2 1406 bp 58.75 2.03 90.68
13_1_40cm_2_scaffold_245183
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
4 2545 bp 57.72 2.89 90.65
13_1_40cm_2_scaffold_201652
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1351 bp 62.47 2.11 90.60
13_1_40cm_2_scaffold_194455
Species: R_Gamma2_65_16 (100%)
1 1375 bp 57.45 2.40 90.55
13_1_40cm_2_scaffold_72355
Phylum: Acidobacteria (50%)
4 4355 bp 60.78 3.03 90.52
13_1_40cm_2_scaffold_187622
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1399 bp 59.97 1.93 90.49
13_1_40cm_2_scaffold_114235
Species: Gemmatimonadetes bacterium KBS708 (100%)
3 2891 bp 59.84 3.23 90.49
13_1_40cm_2_scaffold_131415
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_66_21_curated (50%)
2 1665 bp 60.60 2.97 90.45
13_1_40cm_2_scaffold_64899
Phylum: Gemmatimonadetes (66.67%)
3 2342 bp 62.47 2.24 90.44
13_1_40cm_2_scaffold_195680
Species: RBG_16_Planctomycetes_55_9_curated (50%)
2 1371 bp 59.23 2.74 90.37
13_1_40cm_2_scaffold_422425
Species: RLO_Gemmatimonadetes_68_9 (100%)
1 1308 bp 61.62 4.70 90.37
13_1_40cm_2_scaffold_142758
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1597 bp 60.11 1.78 90.36
13_1_40cm_2_scaffold_278013
Species: Gemmatimonas aurantiaca (50%)
2 1149 bp 60.23 2.48 90.34
13_1_40cm_2_scaffold_349713
Species: R_Gemmatimonadetes_71_11 (50%)
2 1010 bp 60.99 4.46 90.30
13_1_40cm_2_scaffold_241828
Species: Gemmatimonadetes bacterium KBS708 (50%)
4 2070 bp 61.40 2.68 90.29
13_1_40cm_2_scaffold_202249
Species: RLO_Gemmatimonadetes_68_9 (100%)
1 1349 bp 60.49 1.89 90.29
13_1_40cm_2_scaffold_309131
Species: Gemmatimonas aurantiaca (50%)
2 1090 bp 61.74 2.48 90.28
13_1_40cm_2_scaffold_330101
Species: R_Ignavibacteria_55_14 (50%)
2 1449 bp 57.83 2.01 90.27
13_1_40cm_2_scaffold_197139
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1366 bp 58.49 4.50 90.26
13_1_40cm_2_scaffold_267771
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1171 bp 58.41 2.69 90.18
13_1_40cm_2_scaffold_15467
Species: R_Acidobacteria_61_28 (50%)
4 4391 bp 57.50 2.60 90.12
13_1_40cm_2_scaffold_34516
Species: Gemmatimonadetes bacterium KBS708 (50%)
6 3732 bp 59.86 2.73 90.11
13_1_40cm_2_scaffold_20679
Species: Gemmatimonadetes bacterium KBS708 (66.67%)
6 3893 bp 60.24 3.28 90.11
13_1_40cm_2_scaffold_622627
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1106 bp 58.23 2.17 90.05
13_1_40cm_2_scaffold_32460
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 3205 bp 57.82 3.00 90.05
13_1_40cm_2_scaffold_334529
Species: Gemmatimonas aurantiaca (50%)
2 1043 bp 61.36 1.87 90.03
13_1_40cm_2_scaffold_25507
Species: RBG_13_Caldithrix_44_9_curated (66.67%)
3 4563 bp 58.32 2.99 90.01
13_1_40cm_2_scaffold_201962
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1350 bp 60.44 2.00 90.00
13_1_40cm_2_scaffold_219998
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1294 bp 59.58 3.25 89.95
13_1_40cm_2_scaffold_227785
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1271 bp 57.75 2.60 89.93
Displaying items 701-750 of 1121 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.