ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 5.11 Longest contig: 198.51 Kbp Bin length: 714.77 Mbp GC content: 62.30 %

Contigs count: 332944 Features count: 954459 rRNAs count: 48 tRNAs count: 5918

Genome completeness

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 101-150 of 332944 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_1_40cm_3_scaffold_231524 Species: R_NC10_66_22 (50%)	2	1223 bp	61.82	4.42	112.59
13_1_40cm_3_scaffold_506732	3	1146 bp	64.57	12.57	112.57
13_1_40cm_3_scaffold_312121 Species: RBG_13_Chloroflexi_52_14_curated (50%)	2	1021 bp	67.29	3.97	112.54
13_1_40cm_3_scaffold_385098 Species: Leptothrix cholodnii (50%)	2	1384 bp	66.55	6.50	112.50
13_1_40cm_3_scaffold_193684 Species: RBG_13_Caldithrix_44_9_curated (50%)	2	1339 bp	63.63	2.24	112.47
13_1_40cm_3_scaffold_275554	3	1118 bp	54.83	3.09	112.43
13_1_40cm_3_scaffold_641353 Species: Burkholderiales bacterium JOSHI_001 (50%)	2	1014 bp	61.14	1.78	112.43
13_1_40cm_3_scaffold_232811 Species: R_Gallionellales_59_110 (50%)	2	1220 bp	55.90	1.48	112.38
13_1_40cm_3_scaffold_255807 Species: Cupriavidus sp. SK-3 (50%)	2	1164 bp	61.68	4.51	112.37
13_1_40cm_3_scaffold_309097 Species: Moorella thermoacetica (50%)	2	1509 bp	64.08	2.78	112.33
13_1_40cm_3_scaffold_217996 Species: Afipia sp. P52-10 (50%)	2	1261 bp	64.71	3.09	112.29
13_1_40cm_3_scaffold_276217 Domain: Bacteria (66.67%)	3	1117 bp	61.95	6.71	112.26
13_1_40cm_3_scaffold_216778 Species: RBG_19FT_COMBO_Chloroflexi_62_14_curated (50%)	2	1264 bp	70.02	2.85	112.26
13_1_40cm_3_scaffold_403066	3	1164 bp	59.28	1.93	112.11
13_1_40cm_3_scaffold_217789	3	1261 bp	60.98	2.85	112.05
13_1_40cm_3_scaffold_156435 Species: Chthoniobacter flavus (50%)	2	1486 bp	60.97	4.74	112.05
13_1_40cm_3_scaffold_471881 Species: GWA2_Rokubacteria_73_35_curated (50%)	2	1181 bp	65.11	2.92	112.02
13_1_40cm_3_scaffold_179784	2	1390 bp	64.03	11.12	112.01
13_1_40cm_3_scaffold_264178 Species: Candidatus Koribacter versatilis (50%)	2	1626 bp	56.77	4.34	111.99
13_1_40cm_3_scaffold_422708	2	1251 bp	59.31	2.16	111.99
13_1_40cm_3_scaffold_285909 Species: Nostoc sp. PCC 7524 (50%)	2	1093 bp	66.79	3.29	111.99
13_1_40cm_3_scaffold_312346 Species: Mycobacterium rufum (50%)	2	1021 bp	64.74	2.06	111.95
13_1_40cm_3_scaffold_311099 Species: R_Gamma2_60_33 (50%)	2	1024 bp	68.95	3.08	111.91
13_1_40cm_3_scaffold_247558 Species: RBG_16_Chloroflexi_63_12_curated (50%)	2	1183 bp	59.34	3.30	111.83
13_1_40cm_3_scaffold_387504 Species: GWA2_Rokubacteria_70_23_curated (50%)	2	1508 bp	65.58	3.18	111.80
13_1_40cm_3_scaffold_297439 Species: Chloroflexus sp. Y-400-fl (50%)	2	1063 bp	68.96	1.41	111.76
13_1_40cm_3_scaffold_550829 Species: Patulibacter medicamentivorans (50%)	2	1160 bp	69.05	4.40	111.72
13_1_40cm_3_scaffold_281511 Species: CSP1_6_Rokubacteria (50%)	2	1104 bp	73.91	1.90	111.68
13_1_40cm_3_scaffold_479235	3	1053 bp	50.90	2.14	111.68
13_1_40cm_3_scaffold_187283	3	1362 bp	57.12	2.86	111.67
13_1_40cm_3_scaffold_233746 Species: GWC2_Gemmatimonadetes_71_10_curated (100%)	2	1217 bp	63.85	3.94	111.67
13_1_40cm_3_scaffold_312155 Species: uncultured marine microorganism HF4000_APKG7H23 (50%)	2	1021 bp	63.17	4.26	111.65
13_1_40cm_3_scaffold_225684 Phylum: Proteobacteria (50%)	4	1239 bp	58.60	2.78	111.62
13_1_40cm_3_scaffold_159898 Domain: Bacteria (50%)	4	1471 bp	61.73	2.75	111.56
13_1_40cm_3_scaffold_161813 Domain: Bacteria (66.67%)	3	1463 bp	59.06	2.87	111.55
13_1_40cm_3_scaffold_174187 Species: Pelotomaculum thermopropionicum (50%)	2	1412 bp	74.93	2.87	111.54
13_1_40cm_3_scaffold_273469 Species: RLO_RIF_CHLX_71_12 (50%)	2	1603 bp	65.32	2.62	111.54
13_1_40cm_3_scaffold_289527 Phylum: Proteobacteria (66.67%)	3	1084 bp	57.47	2.91	111.53
13_1_40cm_3_scaffold_463308 Species: Roseiflexus sp. RS-1 (50%)	2	1095 bp	62.28	3.42	111.51
13_1_40cm_3_scaffold_581106 Species: marine sediment metagenome (50%)	2	1136 bp	62.94	3.04	111.44
13_1_40cm_3_scaffold_233703 Species: Azospirillum thiophilum (50%)	2	1217 bp	54.23	2.96	111.42
13_1_40cm_3_scaffold_266236 Species: RBG_16_Actinobacteria_68_12_curated (50%)	2	1454 bp	68.23	3.92	111.42
13_1_40cm_3_scaffold_161258	3	1465 bp	53.92	2.56	111.40
13_1_40cm_3_scaffold_332997 Phylum: Actinobacteria (66.67%)	3	1457 bp	70.21	3.40	111.39
13_1_40cm_3_scaffold_202501	3	1309 bp	54.47	2.06	111.38
13_1_40cm_3_scaffold_242073 Species: RLO_Gemmatimonadetes_68_9 (66.67%)	3	1196 bp	73.49	11.54	111.37
13_1_40cm_3_scaffold_223502 Phylum: Actinobacteria (66.67%)	3	1245 bp	66.83	2.65	111.33
13_1_40cm_3_scaffold_286309 Species: Chthoniobacter flavus (66.67%)	3	1092 bp	54.40	3.16	111.26
13_1_40cm_3_scaffold_309002 Species: RBG_16_Gemmatimonadetes_66_8_curated (66.67%)	3	1030 bp	72.23	8.16	111.26
13_1_40cm_3_scaffold_195544 Species: R_Gammaproteobacteria_57_10 (50%)	2	1332 bp	65.54	2.93	111.26

Displaying items 101-150 of 332944 in total

13_1_40cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_1_40cm_3_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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