ggKbase home page

13_1_40cm_4_scaffold_4209_27

Organism: 13_1_40cm_4_UNK

megabin RP 54 / 55 MC: 54 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38
Location: comp(21601..22170)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Streptosporangium roseum (strain ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) RepID=D2B9Q6_STRRD similarity UNIREF
DB: UNIREF100
  • Identity: 53.7
  • Coverage: 177.0
  • Bit_score: 164
  • Evalue 1.30e-37
RNA polymerase sigma factor RpoE Tax=RIFCSPLOWO2_12_FULL_RIF_CHLX_71_12_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 59.9
  • Coverage: 182.0
  • Bit_score: 195
  • Evalue 5.50e-47
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 53.7
  • Coverage: 177.0
  • Bit_score: 164
  • Evalue 3.50e-38

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RLO_RIF_CHLX_71_12 → Chloroflexi → Bacteria

Sequences

DNA sequence
Length: 570
ATGCATCCGATGGAGGGCCGACCAACGGATGGCGATCTGTTCACGCGCGCTCAGCGCGGGGACAAGGCCGCCTACGAAGACATCGTTCGGCGCTACCAGGAAGTCGCTTTTCGGACGGCATACGTGATTACCGGCTCGTCGGCTGACGCCGAGGACGCCGCGCAGGAGAGTTTTGTGAAGGCGTATCGGGCCCTGGCGACGTTCCGCACGGGAGCCGAGCCGAGGCCGTGGCTGCTGCGGATCGTGGCCAACGAGGCGCGCAACCGCGCACGTTCCGCGGGCCGCCGCCACCAGCTGGAGCTGCGCCTGGCGGAACGCTTCCGCCCGGGGGATGCGGCCCCATCCCCCGAGGCGGCGGCCGTCGCCGCCGAGGATCGCAGCCGGCTGCTCGCCCACGTCAACGGGCTAAGCCAGGAAGACCGGCAAGTCATCGCCAGCCGCTACTTCCTGGAACTCAGTGGCGAGGAAACCGCTGCCGCGCTAGGCATCCCCGAGGGCACGGTCAAATCGCGCTTGTCGCGGGCGCTCACGCGCCTGCGGGAGCGGGTCGAGGAGAGTCCTCGTGTCTGA
PROTEIN sequence
Length: 190
MHPMEGRPTDGDLFTRAQRGDKAAYEDIVRRYQEVAFRTAYVITGSSADAEDAAQESFVKAYRALATFRTGAEPRPWLLRIVANEARNRARSAGRRHQLELRLAERFRPGDAAPSPEAAAVAAEDRSRLLAHVNGLSQEDRQVIASRYFLELSGEETAAALGIPEGTVKSRLSRALTRLRERVEESPRV*