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13_1_40cm_4_scaffold_10775

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
13_1_40cm_4_scaffold_10775_1
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(3..326)
DNA (324bp) protein (108aa)
pdhB; pyruvate dehydrogenase E1 component beta subunit (EC:1.2.4.1); K00162 pyruvate dehydrogenase E1 component subunit beta [EC:1.2.4.1] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Pyruvate dehydrogenase E1 component beta subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D1_GEMAT
Transketolase central region
13_1_40cm_4_scaffold_10775_2
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(330..1325)
DNA (996bp) protein (332aa)
pdhA; pyruvate dehydrogenase E1 component alpha subunit (EC:1.2.4.1); K00161 pyruvate dehydrogenase E1 component subunit alpha [EC:1.2.4.1] Tax=GWC2_Gemmatimonadetes_71_10_curated
Pyruvate dehydrogenase E1 component alpha subunit n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D2_GEMAT
pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit
13_1_40cm_4_scaffold_10775_3
R_Gemmatimonadetes_71_11, Gemmatimonadetes, Bacteria

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comp(1322..2257)
DNA (936bp) protein (312aa)
lipA; lipoyl synthase (EC:2.8.1.8); K03644 lipoic acid synthetase [EC:2.8.1.8] Tax=RIFCSPLOWO2_02_FULL_Gemmatimonadetes_71_11_curated
Lipoyl synthase n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D3_GEMAT
Lipoyl synthase
13_1_40cm_4_scaffold_10775_4
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(2336..3265)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7G4_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_10775_5
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(3288..4397)
DNA (1110bp) protein (370aa)
Oxidoreductase n=1 Tax=Streptomyces bottropensis ATCC 25435 RepID=M3EGN7_9ACTO
glycine oxidase ThiO Tax=GWC2_Gemmatimonadetes_71_10_curated
glycine oxidase ThiO
13_1_40cm_4_scaffold_10775_6
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

4441..4662
DNA (222bp) protein (74aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_10775_7
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

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comp(4659..5618)
DNA (960bp) protein (320aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D6D2_9BACT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG90209.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
13_1_40cm_4_scaffold_10775_8
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(5615..7159)
DNA (1545bp) protein (515aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A7N9_GEMAT
hypothetical protein Tax=RBG_16_Gemmatimonadetes_66_8_curated
glycosyl transferase family 2
13_1_40cm_4_scaffold_10775_9
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

comp(7171..7911)
DNA (741bp) protein (247aa)
glycosyl transferase group 1 family protein Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
group 1 glycosyl transferase id=12556756 bin=CNBR_ACIDO species=16ft_combo_ws3 genus=16ft_combo_ws3 taxon_order=16ft_combo_ws3 taxon_class=16ft_combo_ws3 phylum=WS3 tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
group 1 glycosyl transferase
13_1_40cm_4_scaffold_10775_10
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

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comp(8143..9291)
DNA (1149bp) protein (383aa)
multi-sensor hybrid histidine kinase (EC:2.7.13.3); K02482 two-component system, NtrC family, sensor kinase [EC:2.7.13.3] Tax=GWC2_Gemmatimonadetes_71_10_curated
PAS/PAC sensor hybrid histidine kinase id=4905361 bin=GWA2_Methylomirabilis_73_35 species=Dehalogenimonas lykanthroporepellens genus=Dehalogenimonas taxon_order=unknown taxon_class=Dehalococcoidia phylum=Chloroflexi tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
multi-sensor hybrid histidine kinase
13_1_40cm_4_scaffold_10775_11
RBG_19FT_COMBO_Actinobacteria_70_19_curated, Actinobacteria, Bacteria

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comp(10085..10522)
DNA (438bp) protein (146aa)
Fis family transcriptional regulator n=1 Tax=Calescamantes bacterium SCGC AAA471-M6 RepID=UPI0003B5B0E0
hypothetical protein Tax=RBG_19FT_COMBO_Actinobacteria_70_19_curated
Fis family transcriptional regulator
13_1_40cm_4_scaffold_10775_12
GWA2_Rokubacteria_73_35_curated, Rokubacteria, Bacteria

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comp(10519..11208)
DNA (690bp) protein (230aa)
Predicted glutamine amidotransferases Tax=GWA2_Rokubacteria_73_35_curated
Peptidase C26 id=2304934 bin=GWA2_Methylomirabilis_73_35 species=Moorella thermoacetica genus=Moorella taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWA2_Methylomirabilis_73_35 organism_group=NC10 organism_desc=Sibling clade to Methylomirabilis
peptidase C26
13_1_40cm_4_scaffold_10775_13
RBG_16_Gemmatimonadetes_66_8_curated, Gemmatimonadetes, Bacteria

Not on your lists

comp(11205..11702)
DNA (498bp) protein (166aa)
Tax=RBG_16_Gemmatimonadetes_66_8_curated
13_1_40cm_4_scaffold_10775_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11720..13924)
DNA (2205bp) protein (735aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHM8_RHOM4
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY47986.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
13_1_40cm_4_scaffold_10775_15
unknown

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comp(13926..14393)
DNA (468bp) protein (156aa)

This feature has no annotations

13_1_40cm_4_scaffold_10775_16
unknown

Not on your lists

14529..14636
DNA (108bp) protein (36aa)

This feature has no annotations

13_1_40cm_4_scaffold_10775_17
GWC2_Gemmatimonadetes_71_10_curated, Gemmatimonadetes, Bacteria

Not on your lists

14712..15218
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) RepID=C1A6D6_GEMAT
hypothetical protein Tax=GWC2_Gemmatimonadetes_71_10_curated
hypothetical protein
13_1_40cm_4_scaffold_10775_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15222..16085
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MCS8_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY47038.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
Displaying 18 items

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