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13_2_20cm_scaffold_1001_13

Organism: 13_2_20CM_Rokubacteria_69_15_2

partial RP 36 / 55 MC: 1 BSCG 35 / 51 ASCG 8 / 38
Location: comp(9358..9957)

Top 3 Functional Annotations

Value Algorithm Source
sigW5; ECF subfamily RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_71_18_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 81.4
  • Coverage: 199.0
  • Bit_score: 327
  • Evalue 9.70e-87
ECF subfamily RNA polymerase sigma factor id=4197918 bin=GWC2_Methylomirabilis_70_24 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good similarity UNIREF
DB: UNIREF100
  • Identity: 69.9
  • Coverage: 196.0
  • Bit_score: 282
  • Evalue 4.40e-73
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 39.5
  • Coverage: 200.0
  • Bit_score: 140
  • Evalue 5.80e-31

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Taxonomy

R_Rokubacteria_71_18 → Rokubacteria → Bacteria

Sequences

DNA sequence
Length: 600
GTGGAGACGCGGAAGGTCGATACCGACGCGGCCCTCGTCGAGGGGCTCCGGCGCGACGACCCGGAGGCCCCCGAACTCCTCGTGGAGACGTTCGGCGACCGGGTGTACCGCCTCGCGCTGCGCATCACGGGGTCGAACGAAGACGCCGAGGAGGCGGCGCAGGACGCGCTCTGGACGGCGGCGCGCAAGATCCACACGTTCAAGGGCGAGTCGGCGTTCGGCAGCTGGCTCTACCGCATCGCGGCGAACGCGGCCTACCAGAAGCTCCGCGGGCGGAAGGCGAAGGCCCACGAGGTCGCCCTCGACGACGTGCTGCCCTCGCTCGACGGTGACGGCCAGCACTTCGAGCCGATGGACGACTGGTCCAATCGCGTGGACGAGCAGGCCTTGCAGGGCGAGCTGCGGCGCGTGCTCAGCGACGCGATCGACTCGCTGCCGCCCGACTACCGGACGGCTCTGGTGCTGCACGACGTCGAGGGGCTGTCGAACCCCGACATCGCCGAGTCGCTCGCCATCAGTCTGCCGGCCGTGAAGTCGCGGGTGCACCGCTCGCGCCTGTTCGTCCGTAAGCGCCTCGCCGAGTACATGAAGAGCGCATAG
PROTEIN sequence
Length: 200
VETRKVDTDAALVEGLRRDDPEAPELLVETFGDRVYRLALRITGSNEDAEEAAQDALWTAARKIHTFKGESAFGSWLYRIAANAAYQKLRGRKAKAHEVALDDVLPSLDGDGQHFEPMDDWSNRVDEQALQGELRRVLSDAIDSLPPDYRTALVLHDVEGLSNPDIAESLAISLPAVKSRVHRSRLFVRKRLAEYMKSA*