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13_2_20CM_Gemmatimonadetes__33_partial

13_2_20CM_1_Gemmatimonadetes_70_33
In projects: 13_2_20CM_1  |  angelo_ncbi_2016  |  gemmatimonadetes_ggkbase  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Gemmatimonadetes  →  Bacteria

Metagenomic Context

Parent: 13_2_20cm_UNK

Properties

Avg. coverage: 32.50 Longest contig: 14.71 Kbp Bin length: 487.41 Kbp GC content: 69.55 %
Contigs count: 172 Features count: 565 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 19 / 55 BSCG 19 / 51 ASCG 4 / 38 MC: 1
Displaying items 1-50 of 172 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
13_2_20cm_scaffold_277816
Phylum: Gemmatimonadetes (66.67%)
3 1198 bp 72.29 29.12 105.18
13_2_20cm_scaffold_180093
Domain: Bacteria (66.67%)
3 1796 bp 73.05 32.28 102.56
13_2_20cm_scaffold_146366
Phylum: Gemmatimonadetes (100%)
3 1225 bp 69.06 34.63 101.88
13_2_20cm_scaffold_220017
Species: Gemmatimonadetes bacterium KBS708 (100%)
2 1434 bp 70.50 35.88 101.67
13_2_20cm_scaffold_53529
Species: RLO_Gemmatimonadetes_68_9 (57.14%)
7 4659 bp 70.96 31.25 101.48
13_2_20cm_scaffold_157166
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1180 bp 70.17 32.33 101.19
13_2_20cm_scaffold_59711
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1892 bp 71.04 35.29 101.16
13_2_20cm_scaffold_119005
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1360 bp 66.47 30.64 101.03
13_2_20cm_scaffold_47571
Species: RLO_Gemmatimonadetes_68_9 (75%)
4 3418 bp 71.18 31.80 100.85
13_2_20cm_scaffold_30078
Species: Gemmatimonadetes bacterium KBS708 (50%)
4 3938 bp 66.73 34.48 100.79
13_2_20cm_scaffold_187100
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1068 bp 69.85 35.96 100.56
13_2_20cm_scaffold_26464
Species: GWC2_Gemmatimonadetes_71_10_curated (75%)
4 2731 bp 71.70 32.90 100.40
13_2_20cm_scaffold_183482
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1082 bp 70.79 34.80 100.37
13_2_20cm_scaffold_14809
Species: RLO_Gemmatimonadetes_68_9 (71.43%)
7 6863 bp 71.35 31.82 100.36
13_2_20cm_scaffold_55677
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
4 1956 bp 71.52 30.54 100.31
13_2_20cm_scaffold_199492
Species: RBG_16_Acidobacteria_68_9_curated (50%)
2 1017 bp 65.29 34.31 100.30
13_2_20cm_scaffold_110742
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1409 bp 67.28 36.52 100.28
13_2_20cm_scaffold_189314
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1059 bp 70.54 31.29 100.28
13_2_20cm_scaffold_31708
Species: RLO_Gemmatimonadetes_68_9 (66.67%)
3 2519 bp 70.66 31.49 100.28
13_2_20cm_scaffold_75809
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1688 bp 71.15 30.04 100.24
13_2_20cm_scaffold_18662
Species: RLO_Gemmatimonadetes_68_9 (55.56%)
9 9497 bp 70.96 29.63 100.23
13_2_20cm_scaffold_122976
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1338 bp 69.06 40.71 100.22
13_2_20cm_scaffold_21145
Species: RLO_Gemmatimonadetes_68_9 (50%)
4 3015 bp 69.98 32.88 100.20
13_2_20cm_scaffold_230142
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1542 bp 68.55 31.58 100.20
13_2_20cm_scaffold_224017
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1548 bp 68.15 30.16 100.19
13_2_20cm_scaffold_86814
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1584 bp 72.03 31.06 100.19
13_2_20cm_scaffold_170342
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
2 1989 bp 72.05 35.71 100.15
13_2_20cm_scaffold_173780
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 2040 bp 67.94 39.74 100.15
13_2_20cm_scaffold_51517
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 3303 bp 74.60 33.44 100.09
13_2_20cm_scaffold_176489
Species: RLO_Gemmatimonadetes_68_9 (100%)
2 1109 bp 69.61 30.78 100.09
13_2_20cm_scaffold_263417
Species: Gemmatimonadetes bacterium KBS708 (50%)
2 1244 bp 69.94 29.05 100.08
13_2_20cm_scaffold_289770
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1280 bp 71.48 29.81 100.08
13_2_20cm_scaffold_255269
Species: GWC2_Gemmatimonadetes_71_10_curated (50%)
2 1307 bp 68.17 32.65 100.08
13_2_20cm_scaffold_177024
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
1 1107 bp 71.18 29.48 100.00
13_2_20cm_scaffold_189225
Species: R_Gemmatimonadetes_71_11 (66.67%)
3 1059 bp 65.06 33.42 100.00
13_2_20cm_scaffold_6493
Species: RBG_16_Gemmatimonadetes_66_8_curated (66.67%)
3 6578 bp 71.91 35.14 99.97
13_2_20cm_scaffold_49452
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 2065 bp 72.20 32.45 99.95
13_2_20cm_scaffold_251313
Species: RLO_Gemmatimonadetes_68_9 (100%)
1 1681 bp 72.87 34.04 99.94
13_2_20cm_scaffold_93220
Species: GWC2_Gemmatimonadetes_71_10_curated (100%)
1 1531 bp 69.37 34.59 99.93
13_2_20cm_scaffold_123763
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
2 1333 bp 67.22 31.63 99.93
13_2_20cm_scaffold_151905
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1201 bp 72.02 29.05 99.92
13_2_20cm_scaffold_191353
Species: GWA2_Ignavibacteria_54_16_curated (100%)
1 1051 bp 73.36 32.72 99.90
13_2_20cm_scaffold_71784
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1733 bp 67.69 33.89 99.88
13_2_20cm_scaffold_95358
Species: RBG_16_Gammaproteobacteria_66_13_curated (100%)
1 1514 bp 69.15 33.16 99.87
13_2_20cm_scaffold_179613
Species: RBG_16_Gemmatimonadetes_66_8_curated (100%)
1 1097 bp 69.92 28.60 99.82
13_2_20cm_scaffold_180249
Species: RLO_Gemmatimonadetes_68_9 (100%)
1 1094 bp 72.03 41.07 99.82
13_2_20cm_scaffold_186370
Species: RLO_Gemmatimonadetes_68_9 (50%)
2 1070 bp 70.00 30.96 99.81
13_2_20cm_scaffold_197705
Species: Gemmatimonadetes bacterium KBS708 (100%)
1 1025 bp 66.83 39.92 99.80
13_2_20cm_scaffold_201275
Species: RLO_Gemmatimonadetes_68_9 (100%)
1 1010 bp 66.73 36.03 99.80
13_2_20cm_scaffold_72125
Species: RBG_16_Gemmatimonadetes_66_8_curated (50%)
4 2324 bp 72.93 28.94 99.78
Displaying items 1-50 of 172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.