ggKbase | organisms

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 7.36 Longest contig: 136.80 Kbp Bin length: 451.34 Mbp GC content: 62.79 %

Contigs count: 212898 Features count: 596722 rRNAs count: 0 tRNAs count: 0

Genome completeness

megabin RP 54 / 55 MC: 53 BSCG 51 / 51 MC: 51 ASCG 38 / 38 MC: 38

Displaying items 51-100 of 212898 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
13_2_20cm_scaffold_266741 Species: marine sediment metagenome (50%)	2	1092 bp	54.40	10.34	113.46
13_2_20cm_scaffold_109681 Species: R_OD1_Kaiserbacteria_56_24 (50%)	2	1415 bp	65.23	4.43	113.43
13_2_20cm_scaffold_142516 Species: Candidatus Microthrix parvicella (50%)	2	1241 bp	76.15	4.45	113.38
13_2_20cm_scaffold_159155	4	1173 bp	58.82	8.77	113.30
13_2_20cm_scaffold_109445 Species: RBG_16_Euryarchaeota_68_13_curated (50%)	2	1417 bp	50.53	3.37	113.27
13_2_20cm_scaffold_152269 Species: RBG_16_Euryarchaeota_62_10_curated (50%)	2	1200 bp	64.17	6.28	113.25
13_2_20cm_scaffold_155487 Species: Rhodococcus opacus (50%)	2	1187 bp	67.82	4.44	113.23
13_2_20cm_scaffold_334678	3	1091 bp	56.37	15.41	113.02
13_2_20cm_scaffold_135776 Phylum: Acidobacteria (66.67%)	3	1272 bp	58.02	2.76	112.97
13_2_20cm_scaffold_147713 Domain: Bacteria (66.67%)	3	1219 bp	71.78	10.09	112.96
13_2_20cm_scaffold_161499 Species: Bradyrhizobium sp. STM 3843 (50%)	2	1164 bp	64.26	5.39	112.89
13_2_20cm_scaffold_127017	2	1316 bp	70.97	4.01	112.84
13_2_20cm_scaffold_185936 Phylum: Actinobacteria (66.67%)	3	1072 bp	72.39	5.39	112.78
13_2_20cm_scaffold_138130 Species: Bradyrhizobium sp. WSM1253 (50%)	2	1261 bp	63.28	5.18	112.77
13_2_20cm_scaffold_190566 Phylum: Actinobacteria (66.67%)	3	1054 bp	70.68	5.48	112.71
13_2_20cm_scaffold_260730 Species: Burkholderia sp. SJ98 (50%)	2	1456 bp	71.50	10.52	112.71
13_2_20cm_scaffold_189009 Species: Chthonomonas calidirosea (50%)	2	1060 bp	54.34	3.55	112.64
13_2_20cm_scaffold_232895 Species: RBG_16_Chloroflexi_68_14_curated (50%)	2	1449 bp	65.77	3.98	112.63
13_2_20cm_scaffold_173652 Species: marine sediment metagenome (50%)	2	1119 bp	56.75	2.92	112.60
13_2_20cm_scaffold_290148 Species: Conexibacter woesei (100%)	2	1274 bp	71.82	4.33	112.56
13_2_20cm_scaffold_208144	2	1579 bp	66.94	4.29	112.48
13_2_20cm_scaffold_170463	2	1131 bp	66.84	2.44	112.47
13_2_20cm_scaffold_299589 Species: Bradyrhizobium sp. DFCI-1 (50%)	2	1145 bp	64.63	4.60	112.40
13_2_20cm_scaffold_202651	2	1004 bp	59.16	6.75	112.35
13_2_20cm_scaffold_135779 Species: Polaromonas sp. JS666 (50%)	2	1272 bp	54.17	3.35	112.26
13_2_20cm_scaffold_225880 Species: Catenulispora acidiphila (100%)	2	1460 bp	70.62	3.78	112.19
13_2_20cm_scaffold_193277 Species: Nitrolancea hollandica (50%)	2	1043 bp	63.47	5.78	112.18
13_2_20cm_scaffold_149400 Species: Candidatus Koribacter versatilis (50%)	2	1212 bp	54.95	3.31	112.13
13_2_20cm_scaffold_140490 Domain: Bacteria (66.67%)	3	1250 bp	55.20	4.02	112.08
13_2_20cm_scaffold_131576 Species: RBG_16_Actinobacteria_67_15_curated (50%)	2	1293 bp	66.20	4.66	112.07
13_2_20cm_scaffold_174245	3	1117 bp	55.60	3.37	112.00
13_2_20cm_scaffold_100058 Species: Bradyrhizobium sp. LTSP885 (50%)	2	1480 bp	57.23	4.92	111.89
13_2_20cm_scaffold_135939 Species: Chthoniobacter flavus (50%)	2	1271 bp	54.60	8.49	111.88
13_2_20cm_scaffold_185615 Species: RBG_16_Deltaproteobacteria_64_85_curated (50%)	2	1073 bp	65.14	2.57	111.84
13_2_20cm_scaffold_91149 Species: Pedosphaera parvula (50%)	2	1548 bp	58.14	2.59	111.82
13_2_20cm_scaffold_90383 Species: Gemmatimonadetes bacterium KBS708 (50%)	2	1554 bp	65.77	3.71	111.78
13_2_20cm_scaffold_221223 Species: Candidatus Entotheonella sp. TSY1 (50%)	2	1546 bp	70.96	4.87	111.77
13_2_20cm_scaffold_86938 Species: Caldilinea aerophila (50%)	2	1582 bp	72.82	7.30	111.69
13_2_20cm_scaffold_190058	2	1056 bp	70.45	6.66	111.65
13_2_20cm_scaffold_160747 Species: Roseiflexus castenholzii (50%)	2	1167 bp	70.09	7.10	111.57
13_2_20cm_scaffold_114563 Species: Granulicella mallensis (50%)	2	1386 bp	57.14	5.07	111.47
13_2_20cm_scaffold_171181 Phylum: Verrucomicrobia (66.67%)	3	1128 bp	57.27	3.34	111.44
13_2_20cm_scaffold_231962 Species: R_Rokubacteria_73_56 (50%)	4	1489 bp	69.04	8.43	111.42
13_2_20cm_scaffold_162250 Species: GWA2_RIF01_43_8_curated (50%)	2	1161 bp	61.76	7.57	111.37
13_2_20cm_scaffold_335721 Species: Gordonia sp. no. 9 (50%)	2	1105 bp	67.96	5.68	111.31
13_2_20cm_scaffold_96995	3	1502 bp	52.80	5.18	111.25
13_2_20cm_scaffold_169853 Species: RLO_RIF_CHLX_71_12 (50%)	2	1133 bp	66.64	4.87	111.21
13_2_20cm_scaffold_71895 Domain: Bacteria (100%)	3	1732 bp	58.31	4.06	111.20
13_2_20cm_scaffold_157333 Species: Streptomyces scabiei (50%)	2	1180 bp	66.19	1.91	111.10
13_2_20cm_scaffold_91457 Species: uncultured bacterium (100%)	2	1545 bp	54.89	6.50	111.07

Displaying items 51-100 of 212898 in total

13_2_20cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

13_2_20cm_UNK

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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