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13_2_20CM_2_Nitrospirae_61_4

In projects: 13_2_20CM_2  |  angelo_ncbi_2016  |  meta-analysis_of_species_overlap_in_grassland_soils_environments

Consensus taxonomy: Nitrospirae  →  Bacteria

Metagenomic Context

Parent: 13_2_20cm_2_UNK

Properties

Avg. coverage: 3.97 Longest contig: 8.95 Kbp Bin length: 3.25 Mbp GC content: 60.57 %
Contigs count: 1899 Features count: 4284 rRNAs count: 0 tRNAs count: 29

Genome completeness

partial RP 40 / 55 MC: 12 BSCG 33 / 51 MC: 8 ASCG 9 / 38 MC: 2

Description

partial genome.

Displaying items 1201-1250 of 1899 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
13_2_20cm_2_scaffold_240360
Phylum: Nitrospirae (66.67%)
3 1173 bp 56.69 3.07 90.03
13_2_20cm_2_scaffold_51287
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
2 2457 bp 60.52 4.33 89.99
13_2_20cm_2_scaffold_107392
Species: marine sediment metagenome (50%)
2 1747 bp 72.81 3.61 89.98
13_2_20cm_2_scaffold_163566
Species: RLO_PLX_64_10 (50%)
2 1427 bp 66.29 13.56 89.98
13_2_20cm_2_scaffold_235469
Species: R_Nitrospirae_62_14 (66.67%)
3 1187 bp 58.30 3.79 89.97
13_2_20cm_2_scaffold_249804
Species: R_Nitrospirae_62_14 (100%)
1 1147 bp 67.22 4.58 89.97
13_2_20cm_2_scaffold_124475
Phylum: Proteobacteria (50%)
4 1628 bp 56.14 2.58 89.93
13_2_20cm_2_scaffold_226723
Phylum: Nitrospirae (66.67%)
3 1211 bp 60.69 4.95 89.93
13_2_20cm_2_scaffold_160166
Species: R_Acidobacteria_61_28 (50%)
2 1442 bp 57.63 5.93 89.88
13_2_20cm_2_scaffold_23556
Species: R_NC10_66_22 (66.67%)
6 3465 bp 64.42 5.45 89.87
13_2_20cm_2_scaffold_68635
Phylum: Nitrospirae (66.67%)
3 3228 bp 57.56 3.95 89.87
13_2_20cm_2_scaffold_276601
Species: RBG_19FT_COMBO_Thermodesulfovibrio_41_18_curated (50%)
2 1075 bp 62.79 1.67 89.86
13_2_20cm_2_scaffold_258885
Species: R_Nitrospirae_62_14 (50%)
2 1122 bp 56.24 4.55 89.84
13_2_20cm_2_scaffold_38979
Species: Candidatus Nitrospira defluvii (75%)
4 2776 bp 57.42 3.94 89.81
13_2_20cm_2_scaffold_261157
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (50%)
2 1116 bp 56.27 2.02 89.78
13_2_20cm_2_scaffold_123918
Phylum: Nitrospirae (50%)
4 1631 bp 62.84 2.58 89.76
13_2_20cm_2_scaffold_38870
Phylum: Nitrospirae (100%)
7 6061 bp 55.68 3.96 89.74
13_2_20cm_2_scaffold_191190
Species: R_Nitrospirae_62_14 (100%)
2 1321 bp 63.44 5.00 89.70
13_2_20cm_2_scaffold_229041
Species: Candidatus Nitrospira defluvii (50%)
2 1204 bp 54.98 2.99 89.70
13_2_20cm_2_scaffold_18287
Species: Candidatus Nitrospira defluvii (60%)
5 3867 bp 56.89 3.57 89.68
13_2_20cm_2_scaffold_301630
Species: Candidatus Nitrospira defluvii (50%)
2 1014 bp 60.16 6.36 89.65
13_2_20cm_2_scaffold_57901
Phylum: Nitrospirae (100%)
3 2326 bp 55.33 3.22 89.64
13_2_20cm_2_scaffold_109082
Species: Candidatus Nitrospira defluvii (50%)
2 1734 bp 59.80 3.72 89.62
13_2_20cm_2_scaffold_43552
Phylum: Nitrospirae (60%)
5 4603 bp 58.09 3.49 89.55
13_2_20cm_2_scaffold_209269
Phylum: Nitrospirae (100%)
4 1263 bp 61.84 2.61 89.55
13_2_20cm_2_scaffold_90601
Species: Candidatus Nitrospira defluvii (50%)
2 1893 bp 64.61 3.33 89.54
13_2_20cm_2_scaffold_103794
Domain: Bacteria (75%)
4 1776 bp 54.05 3.38 89.53
13_2_20cm_2_scaffold_299310
Species: RBG_19FT_COMBO_Nitrospirae_58_9_curated (100%)
1 1019 bp 65.26 3.53 89.50
13_2_20cm_2_scaffold_175481
Species: CG_Arma_02 (100%)
1 1378 bp 58.78 1.85 89.48
13_2_20cm_2_scaffold_197290
Phylum: Nitrospirae (100%)
3 1301 bp 60.42 3.46 89.47
13_2_20cm_2_scaffold_115027
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_65_11_curated (50%)
2 1690 bp 66.04 3.02 89.47
13_2_20cm_2_scaffold_116438
Species: GWC2_Nitrospirae_57_13_curated (50%)
2 1680 bp 60.77 3.93 89.46
13_2_20cm_2_scaffold_259629
Species: R_Nitrospirae_62_14 (100%)
1 1120 bp 59.02 1.74 89.46
13_2_20cm_2_scaffold_181185
Species: Candidatus Nitrospira defluvii (100%)
2 1356 bp 55.38 1.55 89.38
13_2_20cm_2_scaffold_280632
Species: RLO_RIF03_38_15 (100%)
1 1064 bp 59.40 3.10 89.38
13_2_20cm_2_scaffold_124828
Species: Candidatus Nitrospira defluvii (50%)
4 1625 bp 54.40 4.06 89.35
13_2_20cm_2_scaffold_34105
Phylum: Nitrospirae (80%)
5 2948 bp 60.31 4.73 89.35
13_2_20cm_2_scaffold_286908
Species: RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated (100%)
2 1048 bp 65.27 2.43 89.31
13_2_20cm_2_scaffold_105544
Species: R_Nitrospirae_62_14 (50%)
2 1761 bp 62.69 3.49 89.27
13_2_20cm_2_scaffold_17121
Species: R_Nitrospirae_62_14 (50%)
6 3977 bp 56.53 3.70 89.24
13_2_20cm_2_scaffold_184200
Species: RBG_16_Spirochaetes_49_21_curated (50%)
2 1345 bp 57.10 4.24 89.22
13_2_20cm_2_scaffold_222366
Species: Candidatus Nitrospira defluvii (50%)
2 1224 bp 57.52 3.43 89.22
13_2_20cm_2_scaffold_253400
Species: R_Acidobacteria_61_28 (100%)
1 1137 bp 70.27 5.01 89.18
13_2_20cm_2_scaffold_164394
Species: GWB2_Nitrospirae_47_37_curated (50%)
2 1423 bp 64.72 1.90 89.18
13_2_20cm_2_scaffold_19061
Species: Candidatus Nitrospira defluvii (50%)
6 3795 bp 60.13 2.81 89.17
13_2_20cm_2_scaffold_87322
Species: R_Nitrospirae_62_14 (50%)
2 1926 bp 64.95 2.96 89.10
13_2_20cm_2_scaffold_263380
Species: R_Nitrospirae_62_14 (100%)
2 2108 bp 56.07 3.63 89.09
13_2_20cm_2_scaffold_72074
Species: R_Nitrospirae_62_14 (75%)
4 2105 bp 62.61 3.99 89.07
13_2_20cm_2_scaffold_73611
Species: R_Nitrospirae_62_14 (50%)
2 2085 bp 61.15 2.73 89.06
13_2_20cm_2_scaffold_218972
Species: Candidatus Nitrospira defluvii (50%)
2 1233 bp 61.56 2.31 89.05
Displaying items 1201-1250 of 1899 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.