ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_319611

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_319611_1
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(231..3611)
DNA (3381bp) protein (1127aa)
Cation/multidrug efflux pump n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ60_SINAD
cation/multidrug efflux pump
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGA31509.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_2
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(3608..7015)
DNA (3408bp) protein (1136aa)
Cation/multidrug efflux pump n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ60_SINAD
Cation/multidrug efflux pump {ECO:0000313|EMBL:AGA31509.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
cation/multidrug efflux pump
berkeley_reactor_200306_planktonic_scaffold_319611_3
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(7416..8732)
DNA (1317bp) protein (439aa)
RND family efflux transporter, MFP subunit n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DRA3_SINAD
RND family efflux transporter MFP subunit
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:AGA31507.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_4
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

9695..25327
DNA (15633bp) protein (5211aa)
3-carboxy-cis,cis-muconate lactonizing enzyme n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QNY4_NOSS7
3-carboxy-cis,cis-muconate lactonizing enzyme {ECO:0000313|EMBL:AFY47128.1}; TaxID=28072 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain ATCC 29411 / PCC 7524).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_319611_5
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

25597..26175
DNA (579bp) protein (193aa)
Uncharacterized protein n=2 Tax=Singulisphaera acidiphila RepID=L0DL46_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA29578.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_6

Not on your lists

26347..26988
DNA (642bp) protein (214aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RC74_SPISS
Marine sediment metagenome DNA, contig: S06H3_L03482 {ECO:0000313|EMBL:GAI13802.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
berkeley_reactor_200306_planktonic_scaffold_319611_7
Anaeromyxobacter sp. K, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27031..27288)
DNA (258bp) protein (86aa)
integral membrane sensor signal transduction histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=447217 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. (strain K).;"
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Anaeromyxobacter sp. (strain K) RepID=B4UK85_ANASK
berkeley_reactor_200306_planktonic_scaffold_319611_8
Gloeobacter violaceus, Gloeobacter, Gloeobacterales, Gloeobacteria, Cyanobacteria, Bacteria

Not on your lists

28010..28273
DNA (264bp) protein (88aa)
addiction module antitoxin n=1 Tax=Scytonema hofmanni RepID=UPI00034CD864
hypothetical protein
Gsr0356 protein {ECO:0000313|EMBL:BAC88297.1}; TaxID=251221 species="Bacteria; Cyanobacteria; Gloeobacteria; Gloeobacterales; Gloeobacter.;" source="Gloeobacter violaceus (strain PCC 7421).;"
berkeley_reactor_200306_planktonic_scaffold_319611_9
Chamaesiphon minutus, Chamaesiphon, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(28375..28773)
DNA (399bp) protein (133aa)
Restriction endonuclease n=1 Tax=Chamaesiphon minutus PCC 6605 RepID=K9UPS1_9CHRO
restriction endonuclease
Restriction endonuclease {ECO:0000313|EMBL:AFY97087.1}; TaxID=1173020 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Chamaesiphon.;" source="Chamaesiphon minutus PCC 6605.;"
berkeley_reactor_200306_planktonic_scaffold_319611_10
Candidatus Entotheonella sp. TSY2, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28773..29027)
DNA (255bp) protein (85aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4768
Uncharacterized protein {ECO:0000313|EMBL:ETX06445.1}; TaxID=1429439 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY2.;"
berkeley_reactor_200306_planktonic_scaffold_319611_11
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29222..30352)
DNA (1131bp) protein (377aa)
Osmosensitive K+ channel His kinase sensor n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DJW0_SINAD
osmosensitive K+ channel His kinase sensor
Osmosensitive K+ channel His kinase sensor {ECO:0000313|EMBL:AGA29679.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_12
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(30432..32570)
DNA (2139bp) protein (713aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Potassium-transporting ATPase B chain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DK94_SINAD
K+-transporting ATPase subunit B
berkeley_reactor_200306_planktonic_scaffold_319611_13
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32801..34570)
DNA (1770bp) protein (590aa)
Potassium-transporting ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00275};; ATP phosphohydrolase [potassium-transporting] A chain {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-binding and translocating subunit A {ECO:0000256|HAMAP-Rule:MF_00275}; Potassium-translocating ATPase A chain {ECO:0000256|HAMAP-Rule:MF_00275}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
Potassium-transporting ATPase A chain n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLW9_SINAD
K+-transporting ATPase, KdpA
berkeley_reactor_200306_planktonic_scaffold_319611_14
unknown

Not on your lists

comp(34598..34735)
DNA (138bp) protein (46aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_319611_15
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(35186..35908)
DNA (723bp) protein (241aa)
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLX4_SINAD
response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains
Response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains {ECO:0000313|EMBL:AGA29681.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_16
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(35905..37764)
DNA (1860bp) protein (620aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
PAS domain S-box n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DLH4_SINAD
PAS domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_319611_17
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(38539..39468)
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DAC0_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA25601.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
berkeley_reactor_200306_planktonic_scaffold_319611_18
Rhodopirellula maiorica, Rhodopirellula, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(39684..41075)
DNA (1392bp) protein (464aa)
Protein containing DUF839, bacterial n=1 Tax=Rhodopirellula maiorica SM1 RepID=M5RHN7_9PLAN
Protein containing DUF839, bacterial {ECO:0000313|EMBL:EMI18795.1}; TaxID=1265738 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula maiorica SM1.;"
phosphatase
berkeley_reactor_200306_planktonic_scaffold_319611_19
uncultured planctomycete, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(41514..42026)
DNA (513bp) protein (171aa)
Hypothetical conserved protein n=1 Tax=uncultured planctomycete RepID=H5SBZ9_9BACT
Hypothetical conserved protein {ECO:0000313|EMBL:BAL53685.1}; TaxID=120965 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; environmental samples.;" source="uncultured planctomycete.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_319611_20
Granulicella mallensis, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(42119..42850)
DNA (732bp) protein (244aa)
3-oxoacyl-(Acyl-carrier-protein) reductase {ECO:0000313|EMBL:AEU34464.1}; EC=1.1.1.100 {ECO:0000313|EMBL:AEU34464.1};; Flags: Precursor;; TaxID=682795 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8).;"
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NYQ1_GRAMM
3-oxoacyl-(acyl-carrier-protein) reductase
berkeley_reactor_200306_planktonic_scaffold_319611_21
Burkholderia caribensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(43059..43805)
DNA (747bp) protein (249aa)
3-oxoacyl-[acyl-carrier protein] reductase {ECO:0000313|EMBL:ETY83001.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ETY83001.1};; TaxID=1323664 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia caribensis MBA4.;"
Short-chain dehydrogenase/reductase SDR n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JVB1_BURP8
short-chain dehydrogenase/reductase SDR
berkeley_reactor_200306_planktonic_scaffold_319611_22
Granulicella tundricola, Granulicella, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

43928..44332
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI000377B81E
ArsR family transcriptional regulator
Regulatory protein ArsR {ECO:0000313|EMBL:ADW68276.1}; TaxID=1198114 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Granulicella.;" source="Granulicella tundricola (strain ATCC BAA-1859 / DSM 23138 / MP5ACTX9).;"
Displaying 22 items

View Taxonomy