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berkeley_reactor_200306_planktonic_scaffold_22519_3

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 6229..7263

Top 3 Functional Annotations

Value Algorithm Source
squalene-hopene cyclase (EC:5.4.99.-) similarity KEGG
DB: KEGG
  • Identity: 46.5
  • Coverage: 325.0
  • Bit_score: 294
  • Evalue 2.40e-77
squalene-hopene cyclase n=1 Tax=Schlesneria paludicola RepID=UPI00029A37C0 similarity UNIREF
DB: UNIREF100
  • Identity: 54.3
  • Coverage: 313.0
  • Bit_score: 347
  • Evalue 1.10e-92
Squalene-hopene cyclase {ECO:0000313|EMBL:EMB17471.1}; TaxID=1263867 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula europaea 6C.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.3
  • Coverage: 358.0
  • Bit_score: 301
  • Evalue 1.30e-78

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Taxonomy

Rhodopirellula europaea → Rhodopirellula → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 1035
ATGCTCCGACGATGCTGCCCCTGGATCGCGGCCCTGGTCCTCTTCCCGATGCTGGCGGCCCGAGGGGATGAGCCGACGAAGCTCACCCCCAACTCCGACACGGAGCCGATGTCGGAGCAATTTTCTCTTGTCCGTGGCGCCCGGTTCCTGGACACCGTCTCGCTCAATTGGACTCGGAGCCGCAAGTGCGGGACCTGTCACACCAACTACGCCCACATGATGGCCGGCCCGATGGTGGAGAAGTCATCGCCCGAGCTGGCCGAGGTGCGGGCGTTCTTCGAGTCGAGGGTCTCCGGCTGGGACAGACCACAGAAGGGAGCCCGGCCGATCGGCGACGGCGAGATCGTCGCCACGGCCGCCGCGCTGGCGTTCAACGACCGGGCCTCGACGGGGGCGCTCCATCCGCTGACGCGCACCGCCCTGGATCGCATGTGGACGGTCCAGCGAGCCGATGGCGGCTGGACATGGTTCGATTGCGACTATCCGCCGATGGAGGATGACGATTACTACGGGATCGTCCTCGGCGCCGTCGCGGTGGGCCATGCGCCGGGCGACTACAAATCGACCCCCGCGGCGCGGAAAGGCATCGAGAAGGTCCGCGGGTATCTCCGCGCCACACCCGCTCCCAACCTCCATCATCGATCGATGCTGCTCTGGGCCTCGATGGGCCTCGACGGGCTGATGGACATTCCCGAACGCGAACGGACGATCGCCGACCTCCTGGCCCGCCAGCGCCCGGACGGCGGATGGAGCCTGACCTCGCTCGGCCAGTTCACCCGGCGCGATGGCTCGCTAAATCCCGAAGACTCCCCCAGCGACGGCTATGGCACCGGATTCGTGGTCTACGTCCTGCGGCAGTCGGGGATGCCCGCCGACGCCGAGCCGGTGCGCCGGGGGATCGCGTGGCTCAAGACCCACCAACGCGCCAGCGGGCGATGGTTCACCCGCTCTCCGACGCTTGACAGTATCCACTACATCACCCACACCGGGACGGCCTACGCCCTGATGGCCCTTGCCGAATGCGGGGAGAAATAG
PROTEIN sequence
Length: 345
MLRRCCPWIAALVLFPMLAARGDEPTKLTPNSDTEPMSEQFSLVRGARFLDTVSLNWTRSRKCGTCHTNYAHMMAGPMVEKSSPELAEVRAFFESRVSGWDRPQKGARPIGDGEIVATAAALAFNDRASTGALHPLTRTALDRMWTVQRADGGWTWFDCDYPPMEDDDYYGIVLGAVAVGHAPGDYKSTPAARKGIEKVRGYLRATPAPNLHHRSMLLWASMGLDGLMDIPERERTIADLLARQRPDGGWSLTSLGQFTRRDGSLNPEDSPSDGYGTGFVVYVLRQSGMPADAEPVRRGIAWLKTHQRASGRWFTRSPTLDSIHYITHTGTAYALMALAECGEK*