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berkeley_reactor_200306_planktonic_scaffold_39194_57

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 67345..68313

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8QXT6_ISOPI similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 308.0
  • Bit_score: 261
  • Evalue 5.80e-67
RNA polymerase sigma-32 subunit RpoH similarity KEGG
DB: KEGG
  • Identity: 50.3
  • Coverage: 308.0
  • Bit_score: 261
  • Evalue 1.60e-67
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 308.0
  • Bit_score: 261
  • Evalue 8.10e-67

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Taxonomy

Isosphaera pallida → Isosphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 969
ATGACAATCACCAGGCGAGTGCGAGCCTCGGATCCGGGCCCGAGGGCGGAGGCCCTCGGCGGACGCCGGCTCACCTCGGCGGAGGAGCACCAACTCCTGCTCGCCCTGGCCGACTCCAAGAGGCGGATCGCCGGGTTGTTGGACCGAGACGCGCGCGACGCCGACGCACCGAAGGGGTCGATGCGGGACGCCCCGTCTCCGCGGACGCCGGCCGGCGACGCCGAGGGGCGATTCGCCGCCGCCTTCCGACGCTACAGCGAGATCCGGAGCCGCATCGCACTCGGAAACGTCCGCCTCGTCGCCCACGTCGCCAAGCGGTACAGGGACCACGGGCTCTCGCACGCGGACCTCCTCCAAGAAGGGTTCTGCGGGCTCCTCGAGGCCATCGACCGATTCGAGGTCGACCGGGAGACGAAGCTCTCCACCTACGCCACGTGGTGGATCCGCCAGGCGATGCAGCAGGCCGTCGCCGCCGGTGCCTACCCCGTCCGGCTAAGCCCCCGACACCTCCGGATGCTCGCGCAGAACCAGGACGCGCTCGACGCCAAGGGCTCCGCGATCGGACCCGGGTCCGCGCCCGACGACCCGGCGGGATCGTCCTCGCCTCCTCCGGAGATCATTCGCCGGATCGTCGCCGCGACCCGACCGGCCAGATCGGTCGAAGCGCGTTCGTTCGGCCGGGCGGGATCCTCGCCGATCCGCCAGCTGAGCACGCCGGGCGCCGATCCCTGCCTCGGACGGGACCTCGACGAGACGGTCGAACGACTCTTCCAGCACCTCCAGCCCCGCGAACGTGAAGTCCTCTCGTTGCGGTACGGGCTCGTCGGGGAGCCTGAGATGTCGCTCAGCCAGGTCGGGCGTGTCCTGAAGATCTCCAAGGAACGAGTGCGTCAGATCCAGGCACAAGCCTTCGAGAAGCTCCGGAACGCCCCCGAGGAGGGGGCCGCCCGAGAACTCCTCTTCGCGTGA
PROTEIN sequence
Length: 323
MTITRRVRASDPGPRAEALGGRRLTSAEEHQLLLALADSKRRIAGLLDRDARDADAPKGSMRDAPSPRTPAGDAEGRFAAAFRRYSEIRSRIALGNVRLVAHVAKRYRDHGLSHADLLQEGFCGLLEAIDRFEVDRETKLSTYATWWIRQAMQQAVAAGAYPVRLSPRHLRMLAQNQDALDAKGSAIGPGSAPDDPAGSSSPPPEIIRRIVAATRPARSVEARSFGRAGSSPIRQLSTPGADPCLGRDLDETVERLFQHLQPREREVLSLRYGLVGEPEMSLSQVGRVLKISKERVRQIQAQAFEKLRNAPEEGAARELLFA*