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berkeley_reactor_200306_planktonic_scaffold_87489_13

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(18434..19306)

Top 3 Functional Annotations

Value Algorithm Source
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.2
  • Coverage: 283.0
  • Bit_score: 460
  • Evalue 1.40e-126
Shikimate dehydrogenase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DQ30_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 79.2
  • Coverage: 283.0
  • Bit_score: 460
  • Evalue 9.90e-127
shikimate 5-dehydrogenase similarity KEGG
DB: KEGG
  • Identity: 79.2
  • Coverage: 283.0
  • Bit_score: 460
  • Evalue 2.80e-127

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Taxonomy

Singulisphaera acidiphila → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 873
ATGAGGGGACCCTCCGTGGCCACCACCCGCTCCTTCAAGCAAGAACTCGTCGGCGTCTTCGGCTTCCCCGTCGCCGAGAACCCCACCCAGGCGATGATCGAGCCCGCGTTCGCCGACATGGGGCTCGACTGGCGCTACCTGACCGTCGAAGTCCGCCCCGAGGACCTCGGTGCCGCGGTCCGAGGCGCCCGCGCCATGAACTGGAAAGGGTTTAACTGCACGATCCCGCACAAAGTCGCCGTCATCCCCCACCTCGACCGCCTGAGCCCCGCCGCCGAAGCGATTGGAGCGGTTAACTGCGTCATTCATCGCGACGGGGAACTGATCGGCGATAATACGGACGGCAAAGGGTTCCTCCAGTCGGTGCTCACCTTGCGTCCCATCTCGGGAATCCGAGCGGTCATCCTGGGCGCCGGGGGCGCCGCCCGCGCGATCGCGGTCGAGCTGGCCCTGGCCGGTGCAGAACACCTGACCATCGTCAATCGCGACCCCGGTCGTGGTCAAACGCTCACGACGCAGCTCATTGAGCGAACGGGAGTTCCGGCCGAGTTCGTGGTTTGGGAAGGCGAGTACCACGTCCCCGAAGGGGTCGACATGCTCGTCAATGCCACCTCGATCGGCCTCTTCCCGGACGTCGATGCACGCATCCCTGTTGACGTGTCAACCCTCCGAAACGGCATGATCGTCAGTGACGTGATCCCGAATCCCCCGAGGACTCGGCTGGTCCGCGAGGCGGAATCCCAGGGGTGCCGGGTCCTCGACGGCCTCGGGATGCTCGTCAACCAGGGTGTCATCGGCATTCGTCTCTGGTCTGGACAAGACCCGCGCCCCGATGTCATGCGGCAGGCACTGGAAACGGTCTTCGCGAGCTGA
PROTEIN sequence
Length: 291
MRGPSVATTRSFKQELVGVFGFPVAENPTQAMIEPAFADMGLDWRYLTVEVRPEDLGAAVRGARAMNWKGFNCTIPHKVAVIPHLDRLSPAAEAIGAVNCVIHRDGELIGDNTDGKGFLQSVLTLRPISGIRAVILGAGGAARAIAVELALAGAEHLTIVNRDPGRGQTLTTQLIERTGVPAEFVVWEGEYHVPEGVDMLVNATSIGLFPDVDARIPVDVSTLRNGMIVSDVIPNPPRTRLVREAESQGCRVLDGLGMLVNQGVIGIRLWSGQDPRPDVMRQALETVFAS*