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berkeley_reactor_200306_planktonic_scaffold_87489_19

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 23944..24705

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, sigma-70 family n=1 Tax=Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B) RepID=E8R5X8_ISOPI similarity UNIREF
DB: UNIREF100
  • Identity: 45.5
  • Coverage: 246.0
  • Bit_score: 205
  • Evalue 3.90e-50
sigma-70 familyRNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 246.0
  • Bit_score: 205
  • Evalue 1.10e-50
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:ADV63880.1}; Flags: Precursor;; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera pallida (strain ATCC 43644 / DSM 9630 / IS1B).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.5
  • Coverage: 246.0
  • Bit_score: 205
  • Evalue 5.40e-50

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Taxonomy

Isosphaera pallida → Isosphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 762
GTGGACGAGGACAAAGTACACCTGAGCCAGATCGAGACCTGTTGGACGATGGTCTTCCAGGCCCACGAGGGGGAGACCGACTCGGCCTCGGTCGCCCTGCGCCAGTTGATGGAGCGCTATGGGGGGGCGGTCCATCGCTACCTCCTGAGCGTGACCCGCGACCCGGAGCTGGCGGCCGACCTGGCGCAGGAGTTCGCGCTGCGGTTCCTCCGCGGTGCGTTCCGACGTGCCGACCCGAGCCGCGGCCGATTCCGCGACTTCGTCAAGACGGCCGCCATGAACCTGATGATCGATGCCTATCGGCGGACGCGAACCCGTCCCCTTCCGCTCTCCTCCGAGATCCCCGAGCCGGTCATCCCCGGGCTCGACCTCGCCGACCTCGACCGACGGTTCTACGAGTGCTGGCGCGAGGAGCTGCTCAGCCACGCCTGGACGCGGCTCGCCCAGGTCCAGGATGAGTCGGGCACGCCGTACTACGCCGTGCTCCGGTTTCGCGTCGACCACCCCGATCTCCGTTCGGCCGAGATGGCCGAACACCTGGCCGTGCGGCTGGGAAAGCGCGTCAGCGCGAGTTGGGTCCGCCAGACGCTCCATCGCGCCCGCGAGAAGTTCGTGGAGCTGCTCATCCGGGAAGTCGCCCACTCCCTCGGGAACCCGACGCACGAGGAGCTCGACGACGAGCTGAGGAACATGGACCTGTGGAGCTATTGCCGACGCTCGGCCGAATCCCGCAGGCCCGATGCCGGCCGCCGCATGTCCTGA
PROTEIN sequence
Length: 254
VDEDKVHLSQIETCWTMVFQAHEGETDSASVALRQLMERYGGAVHRYLLSVTRDPELAADLAQEFALRFLRGAFRRADPSRGRFRDFVKTAAMNLMIDAYRRTRTRPLPLSSEIPEPVIPGLDLADLDRRFYECWREELLSHAWTRLAQVQDESGTPYYAVLRFRVDHPDLRSAEMAEHLAVRLGKRVSASWVRQTLHRAREKFVELLIREVAHSLGNPTHEELDDELRNMDLWSYCRRSAESRRPDAGRRMS*