ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_128458_27

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 34529..35107

Top 3 Functional Annotations

Value Algorithm Source
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQJ5_9FIRM similarity UNIREF
DB: UNIREF100
  • Identity: 29.3
  • Coverage: 157.0
  • Bit_score: 73
  • Evalue 2.30e-10
RNA polymerase ECF-type sigma factor similarity KEGG
DB: KEGG
  • Identity: 29.0
  • Coverage: 183.0
  • Bit_score: 73
  • Evalue 6.40e-11
Sigma-70 region 2 {ECO:0000313|EMBL:EFB75027.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 29.3
  • Coverage: 157.0
  • Bit_score: 73
  • Evalue 3.20e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Subdoligranulum variabile → Subdoligranulum → Clostridiales → Clostridia → Firmicutes → Bacteria

Sequences

DNA sequence
Length: 579
GTGGACGACTCGGCAACCGCGGACGGAGGGGGTTTGGGAGCGAGGTCTTCTCAGGAAGCCTTCGTGATCGCGTCTTATGAAGGGCTCTATCGCTGGTTCTGCCACGTCACGGCGTCGCCCGAGGTGGCGGCCGATTTGACACAGGCGACGTTCGCCGCGTTCTGGTCGTCGACGGGGCAGCGAAAGCCCCATGTCTCCCAAACGACCTGGCTCTACGCGATCGGACGCAACCTCTGGCGCAAGTGGCTCCGCGACCGCAAGGTCCACTCGTCCGAGGCGTTGGATCGGGTCCGCTCCGACGGTCGTTCGCCGGACCAGCGGGCCGAGGACCGTGAATTCGAGGAGGCCGCCCGGGGCGCGGTCGCCGCGCTCCCTCCCGAACTGCGGGAAGCCTTCACGCTCCGCTTCTGGAGCGAGTTCAGTTACGAGCGGATCGGCGAGGTGCAGGGCGTCGACGCCGGGCTGGCGCGCTGGCGCTACTTCGCGGCCCGACGCCGCCTGCATCATGCGCTCGCCGCTTGGGATCCAGATCGGGGTCGAACCCGGGAGGATGATCATGCCAGATTCCACGAATCTTGA
PROTEIN sequence
Length: 193
VDDSATADGGGLGARSSQEAFVIASYEGLYRWFCHVTASPEVAADLTQATFAAFWSSTGQRKPHVSQTTWLYAIGRNLWRKWLRDRKVHSSEALDRVRSDGRSPDQRAEDREFEEAARGAVAALPPELREAFTLRFWSEFSYERIGEVQGVDAGLARWRYFAARRRLHHALAAWDPDRGRTREDDHARFHES*