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berkeley_reactor_200306_planktonic_scaffold_192102_4

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(4066..7356)

Top 3 Functional Annotations

Value Algorithm Source
WD-40 repeat n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C572D similarity UNIREF
DB: UNIREF100
  • Identity: 35.2
  • Coverage: 841.0
  • Bit_score: 342
  • Evalue 1.50e-90
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 32.4
  • Coverage: 1194.0
  • Bit_score: 408
  • Evalue 2.40e-110
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 51.3
  • Coverage: 308.0
  • Bit_score: 266
  • Evalue 1.70e-68

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Taxonomy

uncultured bacterium → Bacteria

Sequences

DNA sequence
Length: 3291
ATGTCGATCGGAAATCGAGGCACGACCCTCGGCCAGCTCGACACGCTCTTCCGCCTGGGGATGACCGGGGGCCTGACCGATGCGCAGTTGCTCGACCGGTTCCGGTCGCGCCGCGATGAAGTCGCGGAGCTGGCGTTCCGGGCGCTCGTGGAGCGACACGGGGCGATGGTCTTCCGGGTCTGTCGCGCGGTGCTCCGGGACGTCCACGAGGCCGAGGAGGCGTTCCAGGCGACGTTCCTGGTCCTCGCCCGGCGGGCCGGCTCGCTCTGGGTGCGGGACACGCTCGGCCCCTGGCTCCACCAGGTCGCCCATCGCACGTCCGTCTGCGCCAGGGCCACGACGGCCCGGCGCCGTCGGCACGAGTTGCGGGTGGCGGAGCTCGCGGATCGGGCGGAGGACGGTGCCGAGCTCGACGACGTCGGCGACGTCGTCCACCAGGAGCTGGGCCGGTTGCCGCCGCGGTATCGCGAGGCGGTCGTCCTCTGCCTGCTCGAAGGGTTGACGCCCGAGCAGGCGGCCCGGCAGCTCGACTGCCCGGTCGGGACGGTCCACAGCCGGCTGGCCCGGGGGCGAGAGCAACTGCGTTCCCGGCTGGCCCGACGGGGGCTGTCGGTGCCCGTCGCCGTCCTCGCCGAAGGTGCGACGGCACCGGCCGACTCCTTGATCCAGTCCGTCATCAGGGCCGGCATGGGAACGAGTTCGGCCGGGGCGGTCTCAGCGCACGTCGTCGCGTTGTCGGGGGTTGTTTCGAGGAGCATGCTCATGTCCAGGATTCGAGCAACGGCCGCGCTGTTGATGCTCGGCGGGGGGCTGGTGATCGGTGCCGGCGTGGTCGCGAGCCAGGAGCCGGAAGCTCGGCCGCCGGCCGACGCCGTCCCGCCGGCGGATCGACCGGAGGCCCCGCGTCAGGAGTCGCCGGAGAAGGCGATCGCCAAGGATTCGCTGGGCGATCCCCTGCCCCCGGGCGCCCGGCTCCGGCTGGGGACCTCGCGATTCCGCCCCGCTTCGGGAGTCCAGGAGTTGGCGCTGTCGCCCGACGACAAGACCATCATCACGGCGGGAGGCCCGATCGCCTGGGATGCGGCCACCGGCAAGGAGCTCTGGCGGGTCAGCCCCGAGAACGCCTCGAGCGTCCCCGTCGCGGCCTATGGGGTGCGCGCCTTGGCCTTCTCGTCCGACCCGTCCCGGTTCTACACCCCGCTGGGTCATGACGGGGTCGGGGTCTGGGAGACGGCCTCGGGCCGTTTCGAGACCCTGAAGCTCGACCCGAGGAAGACGGCGGTCGGACCGGTCGGCGGGCAGGCCCGATCGATCGACGTCACCTCGGACGGTGCGACACTGGCCCTGGGGAACCCGGCAGGCGTCGCCGTCTACGACCGAAGCGGGTCGGTCCTTTACGAGATCGCGAACGCACCCAAGAAGCCCGTCGACTCCTCACACGATGACCGCCTGGCGTTCTACGAGCATTACAGCTTCGGGCGATTCTCGCCGGACGGGACGATCCTGGCCGTCGTCCTGAGCGAGAAACCCGACGAGCTCCGCCTGTACGAGTCCCGCACCGGTCGCGAATTGCGCCGAGTCGCCCTCTCCGGCCGCCTCGTCCGCTTGGCCTTCTCCCCCGACAGCAAGCGGCTCGCCGCGACCGAACGCGACAGTGCGGTCCGCCTCTACGATGTCGCCACGGGCGAGAGGCTTTGGTCGCATGTCATTAAGCTTACGAATATTTACGAAAATTACACATCGGCCATTGCATTTCATCCCGACGGCAAGGCCCTGGCCGTGTGCGCCACGGACCATCGGATCTACGTCCTCGACCCTTCGACCGGCGAAGAGCAGGCGTCGCTGGCCGGGACTCACTGGTATCCCTGGTGCCTGGCGTTCACGTCGAAGGGCGAGCGGCTCTACTCCTCGGGCTGGGACGCGACGATCCGCGGCTGGGATGTCGCCGGGCGGAAGCCACTCGCGTTGACGCCGATGGGGCACGTGACCGGTGTGATCGCGATCTCCCCCGACGGCAAGACCCTGGCCTACGAGGACGACCAGGGGCCTATCCACCTCGCCGACGCCGGGAGCGGCCAGGAACGAGGCTCGATCTCGCTCCCCGGGGCCAACTACGACGATCTGGCCTTCTCGCCCGACGGCCGGCAACTGGCCGGGGGAGGCGCCGTCGGCGACCAGGTCCACGTCGCGGTCTGGAGCATGCCCGACGGGACGCTCCGGCACCGCTGGGATTGGCCGAAGGGACGCGACCCGCACTCGGTGTCCGAATCCCTCTGCTTCTCGCCGGATGGGGGCCGGCTGGCCACTGCGGTCTTCCGGCAGGATGCGGCCTACGTCTTCGACCTGAAACAAGACCGGCAGATCGCCCGCCTTAAGCAGAACGAGGTCAGGGGTGTCTCCTTCAGCCCCGACGGCAAGACCCTGGTCACCGGCGGTTGGGATTCGAGACTACGCTTCTGGGATCCTGACACCGGCACCGCTCGCGGCGAGTTCAAGCTTGCAGACCATGCCAAGGGAAACGACCTGCGGGTCGAACATGTCGCCCACTCGCCGGAAGGGGGATGGATCGCCACCGCCCATCTCGATGGGAGCGTCCTGATCTGGCAGGCCGACGAGATGCGCCTGAGATCGCGGTTCAACGACGGACGGTTCAATAGCGGGGACTTGACCTTCTCCCCGGACGGCCTTTGGCTGGCCACGGGGGCCGAATCAAACCAGGTGACCATCCTCGACCCGTCGACGGGCCGGAGTGTCTGGAACCTCGGCCGCCATCAGAATCAGTTGATCTCGATCGGTTTCAGTCGCGACGCCCGGACCCTCGTGAGCGGCAGCGGCGACGGCCTCTGCTACGTCTGGGACCTGCGGTCGCCCGCCCCTTCCCCTCGGCCGGAAGACACCCCGGCACGCCTCGTCGATGTCATCTTCGGAGACGACGCCCCGGCGGCCTTCCGGGCGATGGCGGCCCTCGCCGATCATCCCGACGTCGCCGTCGCGCTGCTCTCCGAGAGGCTCCGTCCGTTGACGTCCGTCGTCGACCTGGATCGGGCCGACGAGGGGATCTCGCCCGACGAGGCCCAGCGCCGGCGTCGCCTGCGGATGCTCCACATCAACAAGGACCCGAAGCTCGCGTCGGTCATCGCCGTCCGGCGTGCCCTCTCGCTGCTCGCCCAGTTCGGCACCCCCGAGGCCCTCGCGCCCATCAAGGGCCTGGTCGTGCGCGACCCTACCGGTGACCTCGGCCGGCTCGCGACCGCCACGCTGACGCGGATCGGAGCCACCCCGGTCCCGTGA
PROTEIN sequence
Length: 1097
MSIGNRGTTLGQLDTLFRLGMTGGLTDAQLLDRFRSRRDEVAELAFRALVERHGAMVFRVCRAVLRDVHEAEEAFQATFLVLARRAGSLWVRDTLGPWLHQVAHRTSVCARATTARRRRHELRVAELADRAEDGAELDDVGDVVHQELGRLPPRYREAVVLCLLEGLTPEQAARQLDCPVGTVHSRLARGREQLRSRLARRGLSVPVAVLAEGATAPADSLIQSVIRAGMGTSSAGAVSAHVVALSGVVSRSMLMSRIRATAALLMLGGGLVIGAGVVASQEPEARPPADAVPPADRPEAPRQESPEKAIAKDSLGDPLPPGARLRLGTSRFRPASGVQELALSPDDKTIITAGGPIAWDAATGKELWRVSPENASSVPVAAYGVRALAFSSDPSRFYTPLGHDGVGVWETASGRFETLKLDPRKTAVGPVGGQARSIDVTSDGATLALGNPAGVAVYDRSGSVLYEIANAPKKPVDSSHDDRLAFYEHYSFGRFSPDGTILAVVLSEKPDELRLYESRTGRELRRVALSGRLVRLAFSPDSKRLAATERDSAVRLYDVATGERLWSHVIKLTNIYENYTSAIAFHPDGKALAVCATDHRIYVLDPSTGEEQASLAGTHWYPWCLAFTSKGERLYSSGWDATIRGWDVAGRKPLALTPMGHVTGVIAISPDGKTLAYEDDQGPIHLADAGSGQERGSISLPGANYDDLAFSPDGRQLAGGGAVGDQVHVAVWSMPDGTLRHRWDWPKGRDPHSVSESLCFSPDGGRLATAVFRQDAAYVFDLKQDRQIARLKQNEVRGVSFSPDGKTLVTGGWDSRLRFWDPDTGTARGEFKLADHAKGNDLRVEHVAHSPEGGWIATAHLDGSVLIWQADEMRLRSRFNDGRFNSGDLTFSPDGLWLATGAESNQVTILDPSTGRSVWNLGRHQNQLISIGFSRDARTLVSGSGDGLCYVWDLRSPAPSPRPEDTPARLVDVIFGDDAPAAFRAMAALADHPDVAVALLSERLRPLTSVVDLDRADEGISPDEAQRRRRLRMLHINKDPKLASVIAVRRALSLLAQFGTPEALAPIKGLVVRDPTGDLGRLATATLTRIGATPVP*