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berkeley_reactor_200306_planktonic_scaffold_197512_29

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(44116..44727)

Top 3 Functional Annotations

Value Algorithm Source
PadR family transcriptional regulator n=1 Tax=Verrucomicrobium spinosum RepID=UPI00017450B3 similarity UNIREF
DB: UNIREF100
  • Identity: 59.4
  • Coverage: 207.0
  • Bit_score: 216
  • Evalue 1.80e-53
PadR family transcripitonal regulator {ECO:0000313|EMBL:ETR75613.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 52.1
  • Coverage: 217.0
  • Bit_score: 205
  • Evalue 4.30e-50
PadR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 191.0
  • Bit_score: 191
  • Evalue 1.70e-46

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Taxonomy

Afipia sp. P52-10 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 612
ATGTCTCCGATCAAGCCCTCCTCGAATCCCCTGGCGCTCGCCGTCCTCGTCCTGCTCTTCGAGCGGCCGATGCACCCGTACGAGATGGCGGCGACGCTGAAGATGCGCAACAAGGGGTCCAGCATCAAGTTACGGTACGGGTCGCTGTACACCGTGATCGAGGGGCTCCTCCGTGAAGGGTCGATCGCGGTGAAGGAGACGGTCCGGGAGGGGCGCCGGCCGGAGCGGACGATTTACGAGCTCACGCCGAGCGGCACGGAGAGGATGCGGGCCTGGCTCCGCGAGATGATCGAGACGCCGGCCAAGGAGTACCCGCAATTCGAGGCCGCGCTGTCGCTGCTCCCGGCGGTTCCGCCGGGCGAGGCGGTCGCACTCCTCGACGCGAGGAACGAACGGCTCGGGGAGATCGCAGAGGAGCTGCGCGCCTCGATCGCCGAGGCGTCCAAGGTCGTCGAGCCGTTGTTCTTGGTCGAGGTCGAGTACCGCGTCGCGCTCATCGAGGCCGAACGTCAGTTCCTCGATGAGTTCGTCCGTCGGTTCAGGGACGACGAGGGGTACTCTCGGGTGTGGAAAGGGTTCCATGCCCCCCAGGAGCGTCCCGAACCAAGTTAG
PROTEIN sequence
Length: 204
MSPIKPSSNPLALAVLVLLFERPMHPYEMAATLKMRNKGSSIKLRYGSLYTVIEGLLREGSIAVKETVREGRRPERTIYELTPSGTERMRAWLREMIETPAKEYPQFEAALSLLPAVPPGEAVALLDARNERLGEIAEELRASIAEASKVVEPLFLVEVEYRVALIEAERQFLDEFVRRFRDDEGYSRVWKGFHAPQERPEPS*