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berkeley_reactor_200306_planktonic_scaffold_198373_6

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 6267..6878

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-E factor n=1 Tax=Schlesneria paludicola RepID=UPI00029B4A09 similarity UNIREF
DB: UNIREF100
  • Identity: 44.4
  • Coverage: 198.0
  • Bit_score: 144
  • Evalue 8.50e-32
Probable RNA polymerase sigma-E factor {ECO:0000313|EMBL:EAQ81799.1}; TaxID=314230 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Blastopirellula.;" source="Blastopirellula marina DSM 3645.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 39.4
  • Coverage: 193.0
  • Bit_score: 133
  • Evalue 2.70e-28
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 39.3
  • Coverage: 201.0
  • Bit_score: 126
  • Evalue 5.20e-27

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Taxonomy

Blastopirellula marina → Blastopirellula → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 612
ATGGACGTGCGGGACGATCGGTTCCTGTTGGAATTCGAGCGCGAGGCGCAGGCCGCGCGGCGGGGCGACGTCGCGGCGTTGGAGCGGCTCCTCGAGGCGTTCCGGCCCTACCTGCTCGCGATCGCGCAGCGCGACCTCTCCGACGACCTGCTCGGCAAGGTCGGGGGCTCGGACGTGGTGCAGGAGACGCTGATGGAGGCCCATCGGCACTTCATCAAGTTCGAGGGGGCCGCCCCGGAGGACCTGCGGGCCTGGCTCCGCGAGATCCTCCGGAACAACCTCGCCGACATCGCCCGGCACTACCGATCGACGAGCAAGCGGGCGATCGGCCGAGAGCAGGCCCTCCGGGCCGACGCGTCGTCGTTCGTCGACCCGAACCCGACGCCCGGGACGTCCGCGGTCGCTCGCGAGGAGACCGACGCGCTCGACCTGGCCCTCGCGAGGCTCCCGGAGGTCGACCGGGCGGTGATCCTGTACCGCAACCGCGACCACCTCCCCTTCGACGAGATCGGGCGGCGGCTCGGGCGGTCGGGCGAGGCGGCGCGCAAGCTCTGGGCGAGGGCGATCGACCGGCTCCGCCGCTCGATCGAGACGGGGGAGGCGGGGTCATGA
PROTEIN sequence
Length: 204
MDVRDDRFLLEFEREAQAARRGDVAALERLLEAFRPYLLAIAQRDLSDDLLGKVGGSDVVQETLMEAHRHFIKFEGAAPEDLRAWLREILRNNLADIARHYRSTSKRAIGREQALRADASSFVDPNPTPGTSAVAREETDALDLALARLPEVDRAVILYRNRDHLPFDEIGRRLGRSGEAARKLWARAIDRLRRSIETGEAGS*