ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_198373_35

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 47014..47607

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase specialized sigma subunit, sigma24 n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DL45_SINAD similarity UNIREF
DB: UNIREF100
  • Identity: 52.3
  • Coverage: 195.0
  • Bit_score: 186
  • Evalue 1.40e-44
DNA-directed RNA polymerase subunit sigma24 similarity KEGG
DB: KEGG
  • Identity: 52.3
  • Coverage: 195.0
  • Bit_score: 186
  • Evalue 4.10e-45
Tax=RBG_16_Planctomycetes_64_10_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 52.0
  • Coverage: 198.0
  • Bit_score: 196
  • Evalue 2.60e-47

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

RBG_16_Planctomycetes_64_10_curated → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 594
ATGTCGGACACCGAGACGTTCCAGGACCTGATCGGGCGAGTCCGCGCGGGCGAGGACCTGGCGGCGGCGGAGCTCGTCCGACGCTTCGAGCCCATGGTCCGACGCGCGGCCCGCGTCCGCCTGGCGGACCCTCGGCTCGGTCGCGTCCTCGATTCCATGGACATCTGCCAGTCCGTCATGGCCAGCTTCTTCGTCCGCGCCGCGATGGGGCAGTACGAGTTGGATACGCCCGACCAGCTCATGCGACTGCTGGCGACGATGGCCAAGAACAAGCTCGCGAATCAGGCGAACGGCCAGCGGGCCGCGCGTCGCGACGTCCGGCGCGTCGACCACGGGGCGTTCGAGGCCGTCGAGGTCGCCGGGAAGGACGCGACACCGAGCCGGATCTGCTCGGCCCGCGAGCTCCTGCTAGAGGCCCAGGCGCGGCTGACCCCCGACGAGCGTCGCCTGCTGGAGCTCCGGCAGGAAGGCCGGGAGTGGGCCGAGGTCGCCGCGGAGCAGGGGGGGAACGCCGAGGCCCTCCGCAAGAAGCTCTCTCGGGCCGTCTCTCGAGTCGCCCGAGAGATCGGCCTGGACGAGCCCGACGATGGCTGA
PROTEIN sequence
Length: 198
MSDTETFQDLIGRVRAGEDLAAAELVRRFEPMVRRAARVRLADPRLGRVLDSMDICQSVMASFFVRAAMGQYELDTPDQLMRLLATMAKNKLANQANGQRAARRDVRRVDHGAFEAVEVAGKDATPSRICSARELLLEAQARLTPDERRLLELRQEGREWAEVAAEQGGNAEALRKKLSRAVSRVAREIGLDEPDDG*