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berkeley_reactor_200306_planktonic_scaffold_223806_21

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 21216..21779

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-70 n=1 Tax=Schlesneria paludicola RepID=UPI00029A23B7 similarity UNIREF
DB: UNIREF100
  • Identity: 50.8
  • Coverage: 177.0
  • Bit_score: 168
  • Evalue 3.90e-39
RNA polymerase sigma-E type, Rhodopirellula baltica {ECO:0000313|EMBL:EMI45261.1}; TaxID=595460 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula.;" source="Rhodopirellula sp. SWK7.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 173.0
  • Bit_score: 151
  • Evalue 1.20e-33
RNA polymerase sigma-E factor similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 174.0
  • Bit_score: 140
  • Evalue 4.20e-31

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Taxonomy

Rhodopirellula sp. SWK7 → Rhodopirellula → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 564
ATGGGCACGGATGAGGATCGAGGCCAGGCCTTGGGCCGATTCCGGGAGTACCTCGGCTTGCTCGCCAGGCTTGAGGCGTCGCCTCGGCTCCGGGCGGTCGTGGATCTGTCGGGGGTCGTGCAGCAGACGATGCTCGACGCCCACAGAGCCGAGCCTCGGGATCGGACCGAGGCGCAGACGGTGGCGTGGCTTCGGTCGATCCTCGTGCATAACCTGGCCGATGAGGCCCGACGGCTCGGGGCGGAGAAGCGGGACGTCTCGCGCGAGAGGTCGTTGGAGGCCGCGCTGGAACGGTCGTCGGCCCGGCTGGAGCGCTGGCTGGCCGCCGAGCAGTCGTCCCCGAGTCAGCGGGCGATCCGCCAGGAGGAGATCCTAAAATTGGCGGAGGCACTCGCGATGTTGCCCGACTCGCAACGGCGGGCGGTCGAGCTCCACCACCTCAAGGGGATGAGCCTGGGGGAGATCGCCGAGGAGCTGGGCGTGACCAGGCCGGCCGTCGCCGGGCTCCTCCACCGGGGTCTCAAAGCCTTGCGGGCCAGACTGGCGACCGGGGCGGAGGGCTGA
PROTEIN sequence
Length: 188
MGTDEDRGQALGRFREYLGLLARLEASPRLRAVVDLSGVVQQTMLDAHRAEPRDRTEAQTVAWLRSILVHNLADEARRLGAEKRDVSRERSLEAALERSSARLERWLAAEQSSPSQRAIRQEEILKLAEALAMLPDSQRRAVELHHLKGMSLGEIAEELGVTRPAVAGLLHRGLKALRARLATGAEG*