ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_262938_21

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: comp(29451..30092)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator, MerR family n=1 Tax=Myxococcus xanthus (strain DK 1622) RepID=Q1DE80_MYXXD similarity UNIREF
DB: UNIREF100
  • Identity: 45.6
  • Coverage: 90.0
  • Bit_score: 70
  • Evalue 1.60e-09
Transcriptional regulator MarR {ECO:0000313|EMBL:GAN76149.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 35.7
  • Coverage: 224.0
  • Bit_score: 97
  • Evalue 1.30e-17
MerR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 45.6
  • Coverage: 90.0
  • Bit_score: 70
  • Evalue 4.60e-10

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Acidisphaera rubrifaciens → Acidisphaera → Rhodospirillales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 642
ATGACAGACGAAGGTTTCTCACTAACCGAGTTGGCTGAAGCGAGTGGCATCGAGGCTCGGACAATCCGGTCCTACATCGAAAAGGGGCTGCTATCCGGACCGCAAACGCGGGGACGAGGGGCCAATTACAATAGGGAGCACTTGAATCGCTTAAAGGCAATCCAAACGCTCCGCCGATTCCGACCGGGTGACACACTCGCCGATATTCGCATTAGACTTCAGAAGCTGACTCTTCCCCAGATCCACGGGCTGGCTTCGGGGTTGCTGACGGCCGCGATGGGTGCAGAGGAATCGGAGCCGGTAGGGCACTTATCGTCCTCCGATGACGAGATCGCAAGTGGTCTAACGGATAACAAAGAGGAGGTATTCGCCGCATTACCGTCGGCCAAGATGATCCTCGCGTCTCACATGACTCCAGTGGCTCGGTTGGTGCACGATTTGCGTCTATTTAGTGGAAGAGCTGCCATCGCTCCGGGGTCAAAGGTGGAAGCCTGGCACCGTATCGCTGTGACGGAAGACATAGAACTTTTGGTTCGCTCGGACTTCGGATCGGACCAGATCGCCTTATTCCTCGAGTTGGCCGATTTGCTTCACGATCTACTCAAACGCACAGAAACGCCAACGACGGGAGGAAAAAAGTGA
PROTEIN sequence
Length: 214
MTDEGFSLTELAEASGIEARTIRSYIEKGLLSGPQTRGRGANYNREHLNRLKAIQTLRRFRPGDTLADIRIRLQKLTLPQIHGLASGLLTAAMGAEESEPVGHLSSSDDEIASGLTDNKEEVFAALPSAKMILASHMTPVARLVHDLRLFSGRAAIAPGSKVEAWHRIAVTEDIELLVRSDFGSDQIALFLELADLLHDLLKRTETPTTGGKK*