ggKbase home page

You do not have permission to do that.

Please email help@ggkbase.berkeley.edu for help.

berkeley_reactor_200306_planktonic_scaffold_349413_12

Organism: 2019_SCN_bioreactor_200211_planktonic_Planctomycetes_67_37

near complete RP 47 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 12 / 38 MC: 2
Location: 18717..19217

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4285 similarity UNIREF
DB: UNIREF100
  • Identity: 49.0
  • Coverage: 155.0
  • Bit_score: 155
  • Evalue 3.90e-35
Variovorax paradoxus strain MEDvA23 contig_85, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ21740.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 69.0
  • Coverage: 158.0
  • Bit_score: 235
  • Evalue 5.50e-59
hypothetical protein similarity KEGG
DB: KEGG
  • Identity: 48.8
  • Coverage: 160.0
  • Bit_score: 147
  • Evalue 2.30e-33

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 501
ATGGAGGGCGCGCTGATCGAGCGGATGGATCGCTGGCTCGCGGCACATCGTCCCGACTACTACGCGTGCCTTCAGCCCGGCGTTTCGGACGCGGACCTGGATGCGTTCCAGGCGCGGTTCGAAATCACGCTACCGACCGCATTCCGGGATCTTTACCGCTGGCGGGATGGTCAGGATCCGATGTCGTCCGACTGCCTGCAGGGGAACCGTTCATTCTGCTCCTTGGAGGAAGTGGCCGACACCAAGGACAGACTGGACGGCATGATCGGTTACGACTTCGACGACCCGAGATACTGGCGTCGGGGATGGATCCCGTTTTTGCACAATGGCGGGGGCAGCTACCTCTGCCTCGACCTCGCGGCGGAGGATGGAGGTCAGCCTGGCCAACTCGTCGGGTTCTGGAAGCAGGATGAGGATCGACCGGTCGAGTATCCGAGCCTGGTATCGTGGCTTGGCAGCCTGGTCGCCTCGATGGAAGACGGGCCGCCACAGCCTATTTAA
PROTEIN sequence
Length: 167
MEGALIERMDRWLAAHRPDYYACLQPGVSDADLDAFQARFEITLPTAFRDLYRWRDGQDPMSSDCLQGNRSFCSLEEVADTKDRLDGMIGYDFDDPRYWRRGWIPFLHNGGGSYLCLDLAAEDGGQPGQLVGFWKQDEDRPVEYPSLVSWLGSLVASMEDGPPQPI*