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berkeley_reactor_200306_planktonic_scaffold_80596_89

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(118655..119500)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, FliA/WhiG n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IM78_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 45.5
  • Coverage: 277.0
  • Bit_score: 241
  • Evalue 7.00e-61
RNA polymerase subunit sigma-28 similarity KEGG
DB: KEGG
  • Identity: 45.5
  • Coverage: 277.0
  • Bit_score: 241
  • Evalue 2.00e-61
Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_11_51_15_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 48.4
  • Coverage: 256.0
  • Bit_score: 256
  • Evalue 3.00e-65

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Taxonomy

R_RIF_OD1_11_51_15 → RIF-OD1-11 → Parcubacteria → Bacteria

Sequences

DNA sequence
Length: 846
ATGAGCAGTGCAATCTGTGAACTCGTGGACCCGCCCGCTGTCGCTCCGGCGCCAAACCCGACGGCGCAGGAGCTGTGGCAGCGTTACCATCGCGGCCTTGACGCCAACACGGAAGACGCGCTCGTGGAAAAGTATCTGCCGCTGGTTTCATCCGCCGTCGCCCGGCTGGCCATGACCCTGCCGGAACATGTGGATCAGGACGATCTTTACAGCGTGGGTCTAGTGGGCCTGCTGCAGGCGCTGCGCAATTACGATCCGAACAGCGGTTCCTCCTTTGAAACTTACGCCCGTCTGCGCATCCGCGGTTCCATGCTGGACGAATTGCGGCGCATGGACTGGGTGCCCAGAACCATCCATGAAAAAGCCCGCAAGCTCAAGGCGGTCATGGCTGATCTGGAACAGCGGCTTGGCCAGGCGCCAACCGAAGCGCAAATGGCGCGGGAACTCAACCTGTCCGTCGCCGAATACAATCATCTGCTGAATGAAGTGCGGCCGGCCACGTTTATCTGCCTGGATGCCGCGGGCAACTCCGATGAGGGCGAAGACGGCAGCCTCTATGAGGTGATTGCTGATGAATCGGAGGAGAATCCGGTGGACGTGGCGTCGCGGCAGGAACTCAAGCAGGTGGTGTTTGAGCGGCTGCAAAGTTTGCCGGAAATGCAGCGCAAGGTTTTGGCGCTGTATTATCTCGAAGACATGCATCTGCGCGAGATCGCCGAGGCGTTCGGGCTGACGGAATCGCGCATTTGCCAGATTCACGCGCAGGCCATTCTGGCCATGCGTGCGCATGTTCAACGATTTGAAGCCGGGCTGGTGAAACGGCCCACAACCGTGGCGGCCGCATGA
PROTEIN sequence
Length: 282
MSSAICELVDPPAVAPAPNPTAQELWQRYHRGLDANTEDALVEKYLPLVSSAVARLAMTLPEHVDQDDLYSVGLVGLLQALRNYDPNSGSSFETYARLRIRGSMLDELRRMDWVPRTIHEKARKLKAVMADLEQRLGQAPTEAQMARELNLSVAEYNHLLNEVRPATFICLDAAGNSDEGEDGSLYEVIADESEENPVDVASRQELKQVVFERLQSLPEMQRKVLALYYLEDMHLREIAEAFGLTESRICQIHAQAILAMRAHVQRFEAGLVKRPTTVAAA*