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berkeley_reactor_200306_planktonic_scaffold_161060_28

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(33309..36467)

Top 3 Functional Annotations

Value Algorithm Source
transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000367CA3C similarity UNIREF
DB: UNIREF100
  • Identity: 63.5
  • Coverage: 1057.0
  • Bit_score: 1329
  • Evalue 0.0
hydrophobe/amphiphile efflux-1 (HAE1) family transporter similarity KEGG
DB: KEGG
  • Identity: 62.9
  • Coverage: 1048.0
  • Bit_score: 1313
  • Evalue 0.0
Hydrophobe/amphiphile efflux-1 (HAE1) family protein {ECO:0000313|EMBL:EMS42343.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.7
  • Coverage: 1053.0
  • Bit_score: 1313
  • Evalue 0.0

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Taxonomy

Methylobacterium mesophilicum → Methylobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3159
ATGTTCTCCAAATTCTTCATCGAGCGGCCGGTGCTGGCGAATGTCATCGCCATTGTCATGATGTTGCTGGGCGGCGTGGCGATGGTTTCCCTGCCGGTCGCGCAGTATCCGCCCATCACGCCGCCGACGGTGCAGGTGACCGCCAGTTATCCCGGTGCGAGCGCCAAAACCCTGATGGAAACCGTGGCGCTGCCCATCGAGCAGCAGGTCAACGGCGTGGAGGACATGCTTTACATGCAGTCCACCTGCACTTCGGACGGGCGTTACACCTTGACGGTCACGTTCAAGGTCGGAACGGATTTGGATTTCGCGCAGGTGCTCGTGCAAAACCGCGTTGCCGCCGCCATGTCGCAGTTGCCCCTGTCCGTGCAGCAACAGGGCGTGGTGACGAAAAAGAAATCCACCTCCATCCTGCAGATCATCACGCTCACCTCGACCAACCGGGATCAGGACGCGCTGTTCCTGAACAATTACGCGACGATTTCGCTGAAGGACAAGCTGGCGCGGCTGCCCGGCGTCGGCGACATCACGGTGTTCGGCATTGGCCAATACGCCATGCGCGTCTGGCTGAATCCCGAGTTGATGCGCGAGCGTTCGCTGACGCCCAAGGACGTCATCAACGCCATCCAGAAACAAAACGCCAAGGTCGCCGCCGGCCAGATCGGCATGCCGCCTACGCCGGCGGGACAGGATTTTCAACTGACGGTGAACGTGCAGGGTTCATTCACCGACGTCAGCCAGTTTGAAAACATCATCGTCAAGGCGGATTCCGGCAACGGCGGCCAGATCACCCGCCTTCGCGACATCGGCCGGGTGGAACTGGGCGCGCAAACTTACGGCCAGTTTTTCACGATGAACGGCCGGCCCGCCGGCGGCATCGCCATTTATCAACTGCCCGGGGCGAACGCGCTGGACACCGCGCAAGTCGTGCGCAACGCCATGAAACAATACGCCAAGGATTTTCCCCGGGGCATGGCCTATTCGATTCCGTTCGACACCACCACGTTCGTCCGCGAATCGGTCAACGAAGTGTATCGCACGCTGATGGAAGCGGGCGTTTTGGTGTTGCTGGTCATCATGGTGTTTCTGCAAAACTGGCGCGCCACGCTGGTGCCCGCCACCACCGTGCCGGTGACGATCGTCGGCGCGTTCGCCGGCATGGCGCTGCTGGGGTTCAGCATCAATCTGCTCACGCTCTTCGCCATCGTGCTGGCCATCGGCATCGTGGTGGACGACGCCATCGTGATTGTCGAAGGCGCGTCGCAGCACATCGAGCGCGGCAAGACGCCCCGGCAGGCGGCGATTGACGCGATGCGCGATTTGTTCGGCCCGGTGATCGGCATCACGCTGGTGCTGATGTCGGTGTTTTTGCCGCCGGCGTTCATGCCCGGCATCACCGGCCAGATGTATCGGCAATTCGCCCTCGTCATCGCCGTCACCGCCGTCATCAGCGCCGTGAACGCCATCACGTTGAAACCGACCCAGTGCGCGCTCTGGCTCCGGTCCAGCGAGCCCGGCCGGAAAAAGAATTTTTTCTTCCGCGGCTTCAACGCCGTCTATGAACCGGCGGAACGCGCCTACACGCGGCTGATCCGGCGCATGGTGGAACGCAGCGGACTGATGGTCTTGATCGCGCTGGCGCTGGTGGTGCTGGCCGGCTGGGGATTGACGCAGGTGCCCACCGGCTTCATTCCCACGGAAGACCAGGGTTACGTGATGGTTTCCGTGCAGTTGCCCGACGGCGCTTCGTTGCAGCGGACGGAAAAGGTGATGAGCCAAATCGTCCAGCTTGGCCGGGACGTTCCCGGCATCGCGCAATCCATCGTCATCGGCGGCATTTCGCCGCTGGACAACAGCGCGTCGCTGGCCAACGCCGGCATCGTGTATTTCATGCTCAAGGACTGGAATGAACGCGGCAAGGGCGAGGATTTGTTGAGCATTTATGAGCATTTGAACCGGAAGCTGGCGAACTTTCAGGACGCCGCCACGCTCGTGCTGGTGCCGCCGCCGATTCAAGGGCTCGGCCTTTCCGGCGGCTTCCAGATGCAGGTGGAATTGACCGACGGCACCTACGATTTCACGCGCCTGCAACGGGCCGCGGACGCCATCGCCGATGCCGCCAAAACTAATCCCGTCATTCGCTCCGCCTTCACGCCGTTCCGCTCCCAGGTGCCGCAAATCGAAATGACCGTGGACCCCGCGCAGGCCGAAACGCTCAACGTGCCGGTCGGCGACGTTTACGACACGCTGCAAACGTATCTCGGCTCCAGCTACGTCAACTTGTTCACGAAGTTCGGCCACAATTTCATGGTGTTTGCGCAGGCCGACGCCAAGCACCGGCTGACGGCGGACGAACTGAAAGGCTATTACGTGCGCAGCCAGACCGGCCAAATGGTGCCGCTCGGCACGCTGGCGGACATTAAATCCACCGTCGGTCCGGGCGTCATCACGCTCTACAATCTTTTCCCGTCCGCCACCATCAACGGCGCGGCCAATCCGGCTTACAGCTCCGGCCAGGCGTTGACCGCCATGGAAGGTATCGCCCACCACGACCTCGGCCCGGGCATGCACTTTGAATGGACCGCCATGTCGTATCAGGAAAAACTCGTGGGCAGTTCCGTCTATCTCGTCTTCGGCCTCGCCATTCTGCTGGTTTACCTCGTGCTGGCCGGCCAGTATGAAAGCTGGATCACGCCCGCCGCTGTCATTTTCGCCGTGCCGCTCGCGCTGCTCGGCACCGTCGGCGCGATGCTCGCCATCGGTTTTGCGAACAACATTTACGTGCAGATCGGCCTCGTGCTGCTCATCGCCTTGTCCGCCAAGAACGCCATTCTCATCGTGGAAATGGCGCGGGAACATCGCGCCGCCGGCATGAGTATTTTGGACGCGACCGTGGAATCGTCGCGCGTGCGTTTCCGCCCGATTTTGATGACGTCGTTCACGTTCATTCTCGGCGTCATGCCGCTGGTGTTCGCGAGCGGCGCCGGCGCCAACGCGCGGCGTTCCCTCGGCATTGCCGTGGCCACCGGCATGCTGGCGTCCACGTGCCTGGCGGTGTTGTTCGTGCCGGCGTTTTACGTGGTGCTGCAACGATTCGCAGAACGCAACCAAGCGGACTCGCCGGCGGCAACAACCTCTTCGGCCCCGAAAGCCGAATAG
PROTEIN sequence
Length: 1053
MFSKFFIERPVLANVIAIVMMLLGGVAMVSLPVAQYPPITPPTVQVTASYPGASAKTLMETVALPIEQQVNGVEDMLYMQSTCTSDGRYTLTVTFKVGTDLDFAQVLVQNRVAAAMSQLPLSVQQQGVVTKKKSTSILQIITLTSTNRDQDALFLNNYATISLKDKLARLPGVGDITVFGIGQYAMRVWLNPELMRERSLTPKDVINAIQKQNAKVAAGQIGMPPTPAGQDFQLTVNVQGSFTDVSQFENIIVKADSGNGGQITRLRDIGRVELGAQTYGQFFTMNGRPAGGIAIYQLPGANALDTAQVVRNAMKQYAKDFPRGMAYSIPFDTTTFVRESVNEVYRTLMEAGVLVLLVIMVFLQNWRATLVPATTVPVTIVGAFAGMALLGFSINLLTLFAIVLAIGIVVDDAIVIVEGASQHIERGKTPRQAAIDAMRDLFGPVIGITLVLMSVFLPPAFMPGITGQMYRQFALVIAVTAVISAVNAITLKPTQCALWLRSSEPGRKKNFFFRGFNAVYEPAERAYTRLIRRMVERSGLMVLIALALVVLAGWGLTQVPTGFIPTEDQGYVMVSVQLPDGASLQRTEKVMSQIVQLGRDVPGIAQSIVIGGISPLDNSASLANAGIVYFMLKDWNERGKGEDLLSIYEHLNRKLANFQDAATLVLVPPPIQGLGLSGGFQMQVELTDGTYDFTRLQRAADAIADAAKTNPVIRSAFTPFRSQVPQIEMTVDPAQAETLNVPVGDVYDTLQTYLGSSYVNLFTKFGHNFMVFAQADAKHRLTADELKGYYVRSQTGQMVPLGTLADIKSTVGPGVITLYNLFPSATINGAANPAYSSGQALTAMEGIAHHDLGPGMHFEWTAMSYQEKLVGSSVYLVFGLAILLVYLVLAGQYESWITPAAVIFAVPLALLGTVGAMLAIGFANNIYVQIGLVLLIALSAKNAILIVEMAREHRAAGMSILDATVESSRVRFRPILMTSFTFILGVMPLVFASGAGANARRSLGIAVATGMLASTCLAVLFVPAFYVVLQRFAERNQADSPAATTSSAPKAE*