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berkeley_reactor_200306_planktonic_scaffold_190120_29

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(37812..38885)

Top 3 Functional Annotations

Value Algorithm Source
Peptide chain release factor 1 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKF6_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 70.7
  • Coverage: 358.0
  • Bit_score: 521
  • Evalue 3.40e-145
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.7
  • Coverage: 358.0
  • Bit_score: 521
  • Evalue 4.80e-145
peptide chain release factor 1 similarity KEGG
DB: KEGG
  • Identity: 57.4
  • Coverage: 357.0
  • Bit_score: 414
  • Evalue 2.20e-113

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Taxonomy

Pedosphaera parvula → Pedosphaera → Verrucomicrobiales → Verrucomicrobiae → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 1074
ATGGATTTGCGTCCGCACATCGAAAAATTTCGCAGCCGCTTTGCCGAGGTGGAATCCCGTTTGAGCGCGCCGGACACGTTTGACCAGCCGGAAAAGGCCCGGGAACTTTCCCGCGAATATGCCCGGCTCAAGGAACTGGTCGCCGTCGGCTCGGCTTATCTCAAGGTGGTCGCCGAACTGGCGGACAACCGCGCCCTGCTCGATTCGGGCGATGTGGAAATGATCGCGCTTGCCCGGGAGGAAATCGCCCGGCTCGAAGCCGGGGAACAAAAGCTGGGCAAGCAGGTTCAATTCGGCCTGGTGCCGCCGGAGCCGAGCGATTCGCGCAATACCATCATCGAAATTCGCGCCGGCGCGGGCGGCTCGGAATCCGCGCTGTTTGCCGCGGATTTGTATCGCATGTATTCGCGCTACTGCGAAGCGCGCGGCTGGAAGGCCGAAACGCTGGATTCCAATCCCTCCGATCTCGGCGGCTTCAAGGAAATCATTTTTCAAGTCAGCGGCGAAGATGTGTTCAAGCGCCTCAAATATGAAAGCGGGGTCCATCGCGTGCAGCGCGTGCCCGCCACCGAGGCGCAGGGCCGGATTCACACCAGCACCTGCACCGTGGCCGTGATGCCGGAAGCCGAGGAGGTGGACATCGAAATCAAGCCCGAGGAAATCGAGGTCAACGTCTGCCGCGCCTCCGGCAAGGGCGGCCAGGGCGTGAACACGACCGATTCCGCCGTTCAAATCATCCACAAGCCCACCGGCCTGATCGTGCGTTGTTCCGACGAACGTTCGCAGATCAAAAACCGGGCCAAGGCCATGACCGTGCTGCGTTCGCGTTTGCTGGAACGCAAGATTGCCGAGGAGAACGCCAGATACGCCGCCTTTCGCAAGGATCAGGTGGGCACCGGTGAACGCAGCGAAAAAATCCGCACCTATAATTTCCCGCAAAACCGCGTCACCGACCATCGGCTGGAACTGACGCTTTACAACCTCTCCAACTTCATTGACGGCGATCTGGACCCGCTGCTCGATCCGTTGATGAATCATGATCTGGAAACGAAACTGGCCGCATTGAAGACGTGA
PROTEIN sequence
Length: 358
MDLRPHIEKFRSRFAEVESRLSAPDTFDQPEKARELSREYARLKELVAVGSAYLKVVAELADNRALLDSGDVEMIALAREEIARLEAGEQKLGKQVQFGLVPPEPSDSRNTIIEIRAGAGGSESALFAADLYRMYSRYCEARGWKAETLDSNPSDLGGFKEIIFQVSGEDVFKRLKYESGVHRVQRVPATEAQGRIHTSTCTVAVMPEAEEVDIEIKPEEIEVNVCRASGKGGQGVNTTDSAVQIIHKPTGLIVRCSDERSQIKNRAKAMTVLRSRLLERKIAEENARYAAFRKDQVGTGERSEKIRTYNFPQNRVTDHRLELTLYNLSNFIDGDLDPLLDPLMNHDLETKLAALKT*