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berkeley_reactor_200306_planktonic_scaffold_220752_33

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(49040..49945)

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Pseudomonas sp. GM55 RepID=J2SZI1_9PSED similarity UNIREF
DB: UNIREF100
  • Identity: 47.8
  • Coverage: 299.0
  • Bit_score: 297
  • Evalue 8.90e-78
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJM72751.1}; TaxID=1144333 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM55.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.8
  • Coverage: 299.0
  • Bit_score: 297
  • Evalue 1.20e-77
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 43.6
  • Coverage: 303.0
  • Bit_score: 255
  • Evalue 1.90e-65

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Taxonomy

Pseudomonas sp. GM55 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGCCGGTTCCTGAGACAACCTCTGCCGAGTCGTTCGCACGCTTTGTGGGTGGAAAATTATTGCGGGTTGGCGAGGGTAAGGCATGGCGTGAGGTGAATGCTTGGATTACGGCTCTGCCTCGGGTCGTGGATTCGCTCCCACTGCCTTCGGTGAGCGAGCCGTTTCTCGCGTGGACGATTTCGGGCCAGGTCGAGTTTCAGGAACGCGAAGGCAATCGGCCTTGGATTACTCATCGCGTCAAGCAAGGATCGTTATTTCTTACGACCGGCGGCGCTCCCTACGAATGCCGATGGAAAGCCGTAACCGCCGAGCCATTTGAGTCCATGGCGGTGTTTTTGGATTTGCAGCTGCTTGAGCGGGCCTTGGAGGAGGTTTTTGGAAGCGACGCACCTTTCGCCCGGCTGCGGGATGCGTCTGCGTTCACCGACGGCACATTGAATGTGTTGATGGCACAATTGCACGGTGAACTCATGCGACGCAAAGCCAGCCCGCTTTTTGTGCAAGGTATCGCGCAGAGCATCGCGATTTATCTCGTCCGCAATTATGCCGAGTTGGTTAAAGAACCCCGCAGTGGCAGTCCGTCGCTGCCGGGCTACAAGGTTCGGCAGATCACGGATTGGATGCGCGAGCACGTCGCAGACGAGTTCAATCTGGCGGAACTGGCGGCGCGAGCGGGCTTGAGCAAATTTTATTTCAACCGCCTTTTTAAAAATGCGACGGGCGTGTCGCCGTTGCATTACCACATGAATTTGCGGATGGACGAGGCGAAACGTCTCTTGCGCGAAACAAAAAAGAGCGTGGTGGAAATTGGGTTGGACGTGGGCTACGCTAATCCCAGCCATTTCGCGAAACTCTTCAAAAGGGAAACGGGATTTTCTCCGAGCGATTATCGCCAGCAACGCTGA
PROTEIN sequence
Length: 302
MPVPETTSAESFARFVGGKLLRVGEGKAWREVNAWITALPRVVDSLPLPSVSEPFLAWTISGQVEFQEREGNRPWITHRVKQGSLFLTTGGAPYECRWKAVTAEPFESMAVFLDLQLLERALEEVFGSDAPFARLRDASAFTDGTLNVLMAQLHGELMRRKASPLFVQGIAQSIAIYLVRNYAELVKEPRSGSPSLPGYKVRQITDWMREHVADEFNLAELAARAGLSKFYFNRLFKNATGVSPLHYHMNLRMDEAKRLLRETKKSVVEIGLDVGYANPSHFAKLFKRETGFSPSDYRQQR*