ggKbase home page

berkeley_reactor_200306_planktonic_scaffold_220752_102

Organism: 2019_SCN_bioreactor_200211_planktonic_Verrucomicrobia_58_30

near complete RP 49 / 55 BSCG 49 / 51 ASCG 14 / 38 MC: 1
Location: comp(114577..116613)

Top 3 Functional Annotations

Value Algorithm Source
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007814}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089, ECO:0000256|SAAS:SAAS00007809};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 81.2
  • Coverage: 688.0
  • Bit_score: 1137
  • Evalue 0.0
Phosphomethylpyrimidine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D313_9BACT similarity UNIREF
DB: UNIREF100
  • Identity: 81.2
  • Coverage: 688.0
  • Bit_score: 1137
  • Evalue 0.0
thiamine biosynthesis protein ThiC similarity KEGG
DB: KEGG
  • Identity: 71.0
  • Coverage: 669.0
  • Bit_score: 951
  • Evalue 7.20e-275

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Chthoniobacter flavus → Chthoniobacter → Spartobacteria → Verrucomicrobia → Bacteria

Sequences

DNA sequence
Length: 2037
ATGATTGCGACCCAAGAATCGTTCGAACCGCACAGCAGCGAACAACTGCCCGCCAGCAAACGCGTTTACGTGCCCGGCGAAATCCATGCCGACGTCCGCGTGCCGATGCGCGAAATCGCCGTCAGCGACACCAAGTCCTACACCGGCGCGATCACCAAGAACGATCCCGTGCGCGTCTATGATTGCAGCGGCCCGTGGGGCGATCCCGAATTCAGAGGCACCGTCGAGAAAGGTCTGCCCGCGCTGCGCCGCGACTGGATTCTCAAGCGCGGCGACGTGGAGGAATACGAAGGCCGCCCCGTGCAGCCCATCGACGACGGTTATCTCTCCGACAAACATCGTTCGCTCTCCAACGCCAAGCGCCAGGACGAAACCGGTTATCGTCTCGAAGGCCTGACCGCGCCCAGGCGCAAACCGCTCCGCGCGAAGCCGGGCAAAGTCGTCACGCAACTGCAATACGCCCGCGCCGGCATCATTACTCCGGAAATGGAATACATCGCCATCCGCGAGAACATGGGCCGCGCGAAGATTGCCGAGATGTCGAAGGACATCGTTCGCAACGACCTGAACAAACAGCACGCCGGTTCATCACAGCTTGTAGCGGCGGTCTGTGACCGCCGAAATTCCAACGAAACGAATGAGAACGGCGCTCATAGAGCGCCGCTACAGAGTGATTTCATCCCCTCCGTCTTTCGCCGTTTTCCGCAACGCATCCCCACGCAGATTACGCCCGAATTCGTGCGCGAGGAAATCGCCGCGGGCCGCGCCATCATTCCTTCGAACATCAATCATCCCGAGCTTGAGCCGATGATCATCGGGCGTAACTTCCTTGTGAAGATCAACGCCAACATCGGCAACAGCGCCGTCGCCTCGAGCATCGAAGAGGAAGTCGAGAAGATGCGCTGGGCCACCAAGTGGGGCGCGGACACCGTGATGGATCTCTCCACCGGCAAGAACATTCACGCCACGCGCGAATGGATTCTCCGCAACTCCCCCGTGCCCATCGGCACCGTGCCGATTTATCAGGCGCTCGAAAAAGTCGGCGGCAAGGCCGAAGACCTCACCTGGGAGATTTTCCGCGACACCCTCATCGAACAAGCCGAGCAAGGCGTGGATTACTTCACCATTCACGCCGGCGTCCTGCTGCGCTTCGTGCCGCTCACCGCCAATCGCATGACCGGCATCGTCTCGCGCGGCGGCAGCATCCTGGCCAAATGGTGTCTCGCGCATCACCAGGAGAATTTCCTCTACACCCACTGGGACGACATCTGCGACATCATGGCCGCGTATGACGTCTCCTTCAGCATCGGCGACGGCCTGCGTCCCGGCTCGATCGCTGACGCCAACGACCAGGCGCAATTCGGCGAACTCCAGGTGCAGGGCGAACTCACCAAACGCGCCTGGGCCAAGGGCGTGCAGGTGATGAACGAAGGTCCCGGCCACGTGCCCATGCACATGATCGAGGAAAACATGCACAAGCAGCTTGAATGGTGCGGCGAAGCCCCGTTCTATACCCTCGGTCCGCTCACTACCGACATCGCGCCCGGCTACGACCACATCACCAGCGGCATCGGTGCGGCGATGATCGGCTGGTATGGCTGTGCGATGCTCTGCTACGTCACGCCCAAAGAACACCTCGGCCTGCCGAATAAGAAAGACGTGAAAGACGGCGTCATCGCCTACAAGATCGCTGCGCACGCCGCCGATCTGGCGAAAGGCCATCCCGGCGCGCAATACCGCGACAACGCGTTGAGCAAGGCGCGCTTTGAATTCCGCTGGGAAGATCAATTCAACCTCAGCCTTGACCCCGTCACCGCTCGTGAATTCCACGACGAAACCCTCCCGCAGGACGGCGCCAAAACCGCCCACTTCTGCTCCATGTGCGGCCCGCACTTCTGCTCGATGAAAATCACCGAAGACGTCCGCAAATACGCCGCTGAACAAGGCATGAGCGAGGAAGACGCGCTGAAAAAGGGGATGGAAGAAAAGTCCAAGGAGTTCGTGGAGAAAGGCGCGGAGGTTTACGCGAAGGCGTGA
PROTEIN sequence
Length: 679
MIATQESFEPHSSEQLPASKRVYVPGEIHADVRVPMREIAVSDTKSYTGAITKNDPVRVYDCSGPWGDPEFRGTVEKGLPALRRDWILKRGDVEEYEGRPVQPIDDGYLSDKHRSLSNAKRQDETGYRLEGLTAPRRKPLRAKPGKVVTQLQYARAGIITPEMEYIAIRENMGRAKIAEMSKDIVRNDLNKQHAGSSQLVAAVCDRRNSNETNENGAHRAPLQSDFIPSVFRRFPQRIPTQITPEFVREEIAAGRAIIPSNINHPELEPMIIGRNFLVKINANIGNSAVASSIEEEVEKMRWATKWGADTVMDLSTGKNIHATREWILRNSPVPIGTVPIYQALEKVGGKAEDLTWEIFRDTLIEQAEQGVDYFTIHAGVLLRFVPLTANRMTGIVSRGGSILAKWCLAHHQENFLYTHWDDICDIMAAYDVSFSIGDGLRPGSIADANDQAQFGELQVQGELTKRAWAKGVQVMNEGPGHVPMHMIEENMHKQLEWCGEAPFYTLGPLTTDIAPGYDHITSGIGAAMIGWYGCAMLCYVTPKEHLGLPNKKDVKDGVIAYKIAAHAADLAKGHPGAQYRDNALSKARFEFRWEDQFNLSLDPVTAREFHDETLPQDGAKTAHFCSMCGPHFCSMKITEDVRKYAAEQGMSEEDALKKGMEEKSKEFVEKGAEVYAKA*